Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1090 and Dsui_1091 are separated by 68 nucleotides Dsui_1091 and Dsui_1092 are separated by 22 nucleotides
Dsui_1090: Dsui_1090 - methyl-accepting chemotaxis protein, at 1,128,774 to 1,130,915
_1090
Dsui_1091: Dsui_1091 - protein-disulfide isomerase, at 1,130,984 to 1,131,697
_1091
Dsui_1092: Dsui_1092 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,131,720 to 1,132,877
_1092
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1129.984 kb on - strand, within Dsui_1090 at 1129.999 kb on + strand, within Dsui_1090 at 1130.009 kb on + strand, within Dsui_1090 at 1130.083 kb on + strand, within Dsui_1090 at 1130.083 kb on + strand, within Dsui_1090 at 1130.091 kb on - strand, within Dsui_1090 at 1130.146 kb on - strand, within Dsui_1090 at 1130.180 kb on - strand, within Dsui_1090 at 1130.192 kb on - strand, within Dsui_1090 at 1130.234 kb on + strand, within Dsui_1090 at 1130.270 kb on + strand, within Dsui_1090 at 1130.272 kb on - strand, within Dsui_1090 at 1130.302 kb on - strand, within Dsui_1090 at 1130.341 kb on - strand, within Dsui_1090 at 1130.601 kb on + strand, within Dsui_1090 at 1130.609 kb on - strand, within Dsui_1090 at 1130.672 kb on - strand, within Dsui_1090 at 1130.714 kb on - strand at 1130.754 kb on - strand at 1130.845 kb on - strand at 1130.902 kb on - strand at 1130.953 kb on + strand at 1130.997 kb on - strand at 1130.997 kb on - strand at 1131.019 kb on + strand at 1131.049 kb on - strand at 1131.067 kb on + strand, within Dsui_1091 at 1131.067 kb on + strand, within Dsui_1091 at 1131.111 kb on - strand, within Dsui_1091 at 1131.113 kb on + strand, within Dsui_1091 at 1131.150 kb on + strand at 1131.177 kb on - strand, within Dsui_1091 at 1131.225 kb on - strand, within Dsui_1091 at 1131.260 kb on - strand, within Dsui_1091 at 1131.305 kb on - strand, within Dsui_1091 at 1131.366 kb on + strand, within Dsui_1091 at 1131.396 kb on - strand, within Dsui_1091 at 1131.467 kb on - strand, within Dsui_1091 at 1131.518 kb on - strand, within Dsui_1091 at 1131.520 kb on - strand, within Dsui_1091 at 1131.530 kb on + strand, within Dsui_1091 at 1131.580 kb on - strand, within Dsui_1091 at 1131.660 kb on + strand at 1131.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,129,984 - Dsui_1090 0.56 +0.2 1,129,999 + Dsui_1090 0.57 +0.3 1,130,009 + Dsui_1090 0.58 +0.2 1,130,083 + Dsui_1090 0.61 +0.6 1,130,083 + Dsui_1090 0.61 +3.4 1,130,091 - Dsui_1090 0.61 -0.4 1,130,146 - Dsui_1090 0.64 +0.6 1,130,180 - Dsui_1090 0.66 +0.6 1,130,192 - Dsui_1090 0.66 +0.6 1,130,234 + Dsui_1090 0.68 -0.7 1,130,270 + Dsui_1090 0.70 -2.0 1,130,272 - Dsui_1090 0.70 +0.6 1,130,302 - Dsui_1090 0.71 -0.4 1,130,341 - Dsui_1090 0.73 +0.6 1,130,601 + Dsui_1090 0.85 +0.6 1,130,609 - Dsui_1090 0.86 -1.0 1,130,672 - Dsui_1090 0.89 +0.1 1,130,714 - +2.1 1,130,754 - -2.6 1,130,845 - +1.1 1,130,902 - -0.8 1,130,953 + -0.2 1,130,997 - +0.2 1,130,997 - -0.2 1,131,019 + +0.6 1,131,049 - -2.5 1,131,067 + Dsui_1091 0.12 -0.4 1,131,067 + Dsui_1091 0.12 -0.4 1,131,111 - Dsui_1091 0.18 -2.6 1,131,113 + Dsui_1091 0.18 +0.6 1,131,150 + +0.6 1,131,177 - Dsui_1091 0.27 -2.4 1,131,225 - Dsui_1091 0.34 -2.3 1,131,260 - Dsui_1091 0.39 -2.3 1,131,305 - Dsui_1091 0.45 -2.0 1,131,366 + Dsui_1091 0.54 +1.6 1,131,396 - Dsui_1091 0.58 -2.3 1,131,467 - Dsui_1091 0.68 -1.2 1,131,518 - Dsui_1091 0.75 -3.4 1,131,520 - Dsui_1091 0.75 -2.5 1,131,530 + Dsui_1091 0.76 +0.6 1,131,580 - Dsui_1091 0.83 -2.6 1,131,660 + +0.6 1,131,741 - -0.0
Or see this region's nucleotide sequence