Strain Fitness in Dechlorosoma suillum PS around Dsui_1091

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1090 and Dsui_1091 are separated by 68 nucleotidesDsui_1091 and Dsui_1092 are separated by 22 nucleotides Dsui_1090: Dsui_1090 - methyl-accepting chemotaxis protein, at 1,128,774 to 1,130,915 _1090 Dsui_1091: Dsui_1091 - protein-disulfide isomerase, at 1,130,984 to 1,131,697 _1091 Dsui_1092: Dsui_1092 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,131,720 to 1,132,877 _1092 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1129.984 kb on - strand, within Dsui_1090at 1129.999 kb on + strand, within Dsui_1090at 1130.009 kb on + strand, within Dsui_1090at 1130.083 kb on + strand, within Dsui_1090at 1130.083 kb on + strand, within Dsui_1090at 1130.091 kb on - strand, within Dsui_1090at 1130.146 kb on - strand, within Dsui_1090at 1130.180 kb on - strand, within Dsui_1090at 1130.192 kb on - strand, within Dsui_1090at 1130.234 kb on + strand, within Dsui_1090at 1130.270 kb on + strand, within Dsui_1090at 1130.272 kb on - strand, within Dsui_1090at 1130.302 kb on - strand, within Dsui_1090at 1130.341 kb on - strand, within Dsui_1090at 1130.601 kb on + strand, within Dsui_1090at 1130.609 kb on - strand, within Dsui_1090at 1130.672 kb on - strand, within Dsui_1090at 1130.714 kb on - strandat 1130.754 kb on - strandat 1130.845 kb on - strandat 1130.902 kb on - strandat 1130.953 kb on + strandat 1130.997 kb on - strandat 1130.997 kb on - strandat 1131.019 kb on + strandat 1131.049 kb on - strandat 1131.067 kb on + strand, within Dsui_1091at 1131.067 kb on + strand, within Dsui_1091at 1131.111 kb on - strand, within Dsui_1091at 1131.113 kb on + strand, within Dsui_1091at 1131.150 kb on + strandat 1131.177 kb on - strand, within Dsui_1091at 1131.225 kb on - strand, within Dsui_1091at 1131.260 kb on - strand, within Dsui_1091at 1131.305 kb on - strand, within Dsui_1091at 1131.366 kb on + strand, within Dsui_1091at 1131.396 kb on - strand, within Dsui_1091at 1131.467 kb on - strand, within Dsui_1091at 1131.518 kb on - strand, within Dsui_1091at 1131.520 kb on - strand, within Dsui_1091at 1131.530 kb on + strand, within Dsui_1091at 1131.580 kb on - strand, within Dsui_1091at 1131.660 kb on + strandat 1131.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,129,984 - Dsui_1090 0.56 +0.2
1,129,999 + Dsui_1090 0.57 +0.3
1,130,009 + Dsui_1090 0.58 +0.2
1,130,083 + Dsui_1090 0.61 +0.6
1,130,083 + Dsui_1090 0.61 +3.4
1,130,091 - Dsui_1090 0.61 -0.4
1,130,146 - Dsui_1090 0.64 +0.6
1,130,180 - Dsui_1090 0.66 +0.6
1,130,192 - Dsui_1090 0.66 +0.6
1,130,234 + Dsui_1090 0.68 -0.7
1,130,270 + Dsui_1090 0.70 -2.0
1,130,272 - Dsui_1090 0.70 +0.6
1,130,302 - Dsui_1090 0.71 -0.4
1,130,341 - Dsui_1090 0.73 +0.6
1,130,601 + Dsui_1090 0.85 +0.6
1,130,609 - Dsui_1090 0.86 -1.0
1,130,672 - Dsui_1090 0.89 +0.1
1,130,714 - +2.1
1,130,754 - -2.6
1,130,845 - +1.1
1,130,902 - -0.8
1,130,953 + -0.2
1,130,997 - +0.2
1,130,997 - -0.2
1,131,019 + +0.6
1,131,049 - -2.5
1,131,067 + Dsui_1091 0.12 -0.4
1,131,067 + Dsui_1091 0.12 -0.4
1,131,111 - Dsui_1091 0.18 -2.6
1,131,113 + Dsui_1091 0.18 +0.6
1,131,150 + +0.6
1,131,177 - Dsui_1091 0.27 -2.4
1,131,225 - Dsui_1091 0.34 -2.3
1,131,260 - Dsui_1091 0.39 -2.3
1,131,305 - Dsui_1091 0.45 -2.0
1,131,366 + Dsui_1091 0.54 +1.6
1,131,396 - Dsui_1091 0.58 -2.3
1,131,467 - Dsui_1091 0.68 -1.2
1,131,518 - Dsui_1091 0.75 -3.4
1,131,520 - Dsui_1091 0.75 -2.5
1,131,530 + Dsui_1091 0.76 +0.6
1,131,580 - Dsui_1091 0.83 -2.6
1,131,660 + +0.6
1,131,741 - -0.0

Or see this region's nucleotide sequence