Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1058 and Dsui_1059 are separated by 3 nucleotides Dsui_1059 and Dsui_1060 overlap by 4 nucleotides Dsui_1060 and Dsui_1061 are separated by 60 nucleotides
Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602
_1058
Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553
_1059
Dsui_1060: Dsui_1060 - putative ATPase (AAA+ superfamily), at 1,092,550 to 1,093,473
_1060
Dsui_1061: Dsui_1061 - membrane-bound lytic murein transglycosylase, at 1,093,534 to 1,094,772
_1061
Position (kb)
1092
1093
1094 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1091.558 kb on + strand, within Dsui_1058 at 1091.573 kb on - strand, within Dsui_1058 at 1091.596 kb on + strand at 1091.596 kb on + strand at 1091.604 kb on - strand at 1092.282 kb on - strand, within Dsui_1059 at 1092.357 kb on - strand, within Dsui_1059 at 1092.374 kb on - strand at 1092.561 kb on + strand at 1093.045 kb on - strand, within Dsui_1060 at 1093.047 kb on - strand, within Dsui_1060 at 1093.115 kb on + strand at 1093.123 kb on - strand, within Dsui_1060 at 1093.272 kb on - strand, within Dsui_1060 at 1093.345 kb on - strand, within Dsui_1060 at 1093.367 kb on - strand, within Dsui_1060 at 1093.372 kb on - strand, within Dsui_1060 at 1093.471 kb on - strand at 1093.476 kb on - strand at 1093.477 kb on - strand at 1093.481 kb on + strand at 1093.481 kb on + strand at 1093.518 kb on - strand at 1093.741 kb on + strand, within Dsui_1061 at 1093.882 kb on + strand, within Dsui_1061 at 1094.029 kb on + strand, within Dsui_1061 at 1094.053 kb on + strand, within Dsui_1061 at 1094.055 kb on + strand, within Dsui_1061 at 1094.063 kb on - strand, within Dsui_1061 at 1094.068 kb on - strand, within Dsui_1061 at 1094.192 kb on - strand, within Dsui_1061 at 1094.327 kb on + strand, within Dsui_1061 at 1094.427 kb on + strand, within Dsui_1061
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,091,558 + Dsui_1058 0.79 +1.1 1,091,573 - Dsui_1058 0.86 +0.2 1,091,596 + -0.7 1,091,596 + +1.2 1,091,604 - +0.2 1,092,282 - Dsui_1059 0.71 +1.9 1,092,357 - Dsui_1059 0.79 +0.9 1,092,374 - +2.0 1,092,561 + -0.4 1,093,045 - Dsui_1060 0.54 +1.8 1,093,047 - Dsui_1060 0.54 +0.5 1,093,115 + +0.6 1,093,123 - Dsui_1060 0.62 +1.8 1,093,272 - Dsui_1060 0.78 +2.1 1,093,345 - Dsui_1060 0.86 +1.6 1,093,367 - Dsui_1060 0.88 +1.4 1,093,372 - Dsui_1060 0.89 +1.1 1,093,471 - +0.4 1,093,476 - +0.0 1,093,477 - +0.6 1,093,481 + +0.6 1,093,481 + +0.6 1,093,518 - +0.6 1,093,741 + Dsui_1061 0.17 -4.0 1,093,882 + Dsui_1061 0.28 -2.8 1,094,029 + Dsui_1061 0.40 -3.3 1,094,053 + Dsui_1061 0.42 -2.6 1,094,055 + Dsui_1061 0.42 -2.6 1,094,063 - Dsui_1061 0.43 +0.6 1,094,068 - Dsui_1061 0.43 +0.6 1,094,192 - Dsui_1061 0.53 +0.6 1,094,327 + Dsui_1061 0.64 -2.3 1,094,427 + Dsui_1061 0.72 -2.8
Or see this region's nucleotide sequence