Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1039 and Dsui_1040 are separated by 82 nucleotides Dsui_1040 and Dsui_1041 are separated by 25 nucleotides
Dsui_1039: Dsui_1039 - GTP-binding protein YchF, at 1,070,447 to 1,071,538
_1039
Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532
_1040
Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718
_1041
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-1
0
1
2 at 1071.570 kb on + strand at 1071.804 kb on + strand, within Dsui_1040 at 1071.896 kb on - strand, within Dsui_1040 at 1071.956 kb on + strand, within Dsui_1040 at 1071.989 kb on + strand, within Dsui_1040 at 1072.035 kb on + strand, within Dsui_1040 at 1072.105 kb on + strand, within Dsui_1040 at 1072.181 kb on + strand, within Dsui_1040 at 1072.187 kb on + strand, within Dsui_1040 at 1072.269 kb on - strand, within Dsui_1040 at 1072.351 kb on + strand, within Dsui_1040 at 1072.466 kb on + strand at 1072.484 kb on + strand at 1072.491 kb on - strand at 1072.530 kb on - strand at 1072.671 kb on + strand at 1072.698 kb on + strand, within Dsui_1041 at 1072.724 kb on - strand, within Dsui_1041 at 1072.813 kb on + strand, within Dsui_1041 at 1072.868 kb on + strand, within Dsui_1041 at 1072.913 kb on + strand, within Dsui_1041 at 1072.942 kb on + strand, within Dsui_1041 at 1073.053 kb on + strand, within Dsui_1041 at 1073.280 kb on + strand, within Dsui_1041 at 1073.364 kb on - strand, within Dsui_1041 at 1073.526 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 1,071,570 + -0.0 1,071,804 + Dsui_1040 0.20 +0.3 1,071,896 - Dsui_1040 0.30 +0.6 1,071,956 + Dsui_1040 0.37 +0.8 1,071,989 + Dsui_1040 0.40 -0.1 1,072,035 + Dsui_1040 0.45 +1.8 1,072,105 + Dsui_1040 0.53 +0.9 1,072,181 + Dsui_1040 0.61 +1.2 1,072,187 + Dsui_1040 0.62 +0.4 1,072,269 - Dsui_1040 0.71 -1.4 1,072,351 + Dsui_1040 0.80 +0.6 1,072,466 + -0.4 1,072,484 + +0.6 1,072,491 - +0.7 1,072,530 - -1.0 1,072,671 + +1.6 1,072,698 + Dsui_1041 0.12 -0.4 1,072,724 - Dsui_1041 0.14 -0.1 1,072,813 + Dsui_1041 0.22 -1.0 1,072,868 + Dsui_1041 0.27 +0.6 1,072,913 + Dsui_1041 0.31 -0.1 1,072,942 + Dsui_1041 0.33 -1.7 1,073,053 + Dsui_1041 0.43 +1.0 1,073,280 + Dsui_1041 0.62 +2.6 1,073,364 - Dsui_1041 0.69 -0.6 1,073,526 + +0.6
Or see this region's nucleotide sequence