Strain Fitness in Dechlorosoma suillum PS around Dsui_1032

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1031 and Dsui_1032 are separated by 167 nucleotidesDsui_1032 and Dsui_1033 are separated by 3 nucleotidesDsui_1033 and Dsui_1034 overlap by 4 nucleotides Dsui_1031: Dsui_1031 - formamidopyrimidine-DNA glycosylase Fpg, at 1,063,698 to 1,064,525 _1031 Dsui_1032: Dsui_1032 - Flp pilus assembly protein TadD, at 1,064,693 to 1,066,432 _1032 Dsui_1033: Dsui_1033 - outer membrane lipoprotein LolB, at 1,066,436 to 1,067,011 _1033 Dsui_1034: Dsui_1034 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 1,067,008 to 1,067,859 _1034 Position (kb) 1064 1065 1066 1067Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1063.742 kb on + strandat 1063.750 kb on - strandat 1063.815 kb on - strand, within Dsui_1031at 1063.887 kb on + strand, within Dsui_1031at 1064.017 kb on + strand, within Dsui_1031at 1064.071 kb on + strandat 1064.089 kb on - strandat 1064.158 kb on - strand, within Dsui_1031at 1064.184 kb on - strand, within Dsui_1031at 1064.200 kb on - strand, within Dsui_1031at 1064.228 kb on + strand, within Dsui_1031at 1064.371 kb on - strand, within Dsui_1031at 1064.407 kb on + strand, within Dsui_1031at 1064.509 kb on - strandat 1064.562 kb on + strandat 1064.569 kb on - strandat 1064.587 kb on - strandat 1064.643 kb on - strandat 1064.648 kb on - strandat 1064.678 kb on - strandat 1064.777 kb on + strandat 1064.825 kb on + strandat 1065.021 kb on + strand, within Dsui_1032at 1065.162 kb on - strandat 1065.469 kb on + strand, within Dsui_1032at 1065.762 kb on + strand, within Dsui_1032at 1066.109 kb on + strand, within Dsui_1032at 1066.209 kb on + strand, within Dsui_1032at 1066.272 kb on + strandat 1066.342 kb on + strandat 1066.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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1,063,742 + +0.6
1,063,750 - +0.6
1,063,815 - Dsui_1031 0.14 +0.0
1,063,887 + Dsui_1031 0.23 +0.6
1,064,017 + Dsui_1031 0.39 +0.6
1,064,071 + +0.6
1,064,089 - +2.2
1,064,158 - Dsui_1031 0.56 -0.5
1,064,184 - Dsui_1031 0.59 +0.9
1,064,200 - Dsui_1031 0.61 +2.6
1,064,228 + Dsui_1031 0.64 -1.4
1,064,371 - Dsui_1031 0.81 -1.4
1,064,407 + Dsui_1031 0.86 -0.4
1,064,509 - +0.7
1,064,562 + +0.6
1,064,569 - -0.4
1,064,587 - -1.4
1,064,643 - -1.0
1,064,648 - +0.6
1,064,678 - -0.4
1,064,777 + -2.5
1,064,825 + -4.8
1,065,021 + Dsui_1032 0.19 -5.0
1,065,162 - +0.6
1,065,469 + Dsui_1032 0.45 -3.8
1,065,762 + Dsui_1032 0.61 -6.7
1,066,109 + Dsui_1032 0.81 -4.1
1,066,209 + Dsui_1032 0.87 -3.2
1,066,272 + -4.5
1,066,342 + -3.9
1,066,439 - +0.6

Or see this region's nucleotide sequence