Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0926 and Dsui_0927 are separated by 3 nucleotides Dsui_0927 and Dsui_0928 are separated by 181 nucleotides
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836
_0927
Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433
_0928
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.659 kb on - strand at 954.814 kb on + strand, within Dsui_0926 at 954.834 kb on + strand, within Dsui_0926 at 954.992 kb on - strand, within Dsui_0926 at 955.015 kb on - strand, within Dsui_0926 at 955.028 kb on + strand, within Dsui_0926 at 955.045 kb on + strand, within Dsui_0926 at 955.053 kb on - strand, within Dsui_0926 at 955.211 kb on + strand, within Dsui_0926 at 955.216 kb on - strand, within Dsui_0926 at 955.275 kb on + strand, within Dsui_0926 at 955.323 kb on + strand at 955.385 kb on - strand at 955.410 kb on + strand at 955.416 kb on + strand at 955.418 kb on - strand at 955.575 kb on - strand, within Dsui_0927 at 955.576 kb on - strand, within Dsui_0927 at 955.677 kb on + strand, within Dsui_0927 at 955.685 kb on - strand, within Dsui_0927 at 955.799 kb on + strand at 955.812 kb on - strand at 955.822 kb on - strand at 955.921 kb on + strand at 955.975 kb on + strand at 955.988 kb on - strand at 956.006 kb on + strand at 956.006 kb on + strand at 956.014 kb on + strand at 956.105 kb on + strand at 956.202 kb on - strand, within Dsui_0928 at 956.217 kb on + strand, within Dsui_0928 at 956.274 kb on - strand, within Dsui_0928 at 956.295 kb on - strand, within Dsui_0928 at 956.301 kb on + strand, within Dsui_0928 at 956.346 kb on + strand, within Dsui_0928 at 956.376 kb on + strand, within Dsui_0928 at 956.388 kb on - strand, within Dsui_0928 at 956.403 kb on - strand, within Dsui_0928 at 956.500 kb on - strand, within Dsui_0928 at 956.670 kb on + strand at 956.692 kb on - strand, within Dsui_0928 at 956.719 kb on + strand, within Dsui_0928 at 956.817 kb on - strand, within Dsui_0928
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 954,659 - +0.5 954,814 + Dsui_0926 0.55 +0.2 954,834 + Dsui_0926 0.56 +0.3 954,992 - Dsui_0926 0.67 -1.1 955,015 - Dsui_0926 0.69 -0.5 955,028 + Dsui_0926 0.70 -0.8 955,045 + Dsui_0926 0.71 +1.9 955,053 - Dsui_0926 0.72 -1.1 955,211 + Dsui_0926 0.83 -0.4 955,216 - Dsui_0926 0.83 +1.5 955,275 + Dsui_0926 0.88 +1.2 955,323 + -0.6 955,385 - -1.0 955,410 + -0.5 955,416 + -1.4 955,418 - +0.4 955,575 - Dsui_0927 0.32 +0.4 955,576 - Dsui_0927 0.33 +1.3 955,677 + Dsui_0927 0.59 -0.5 955,685 - Dsui_0927 0.61 +0.4 955,799 + -3.5 955,812 - +1.2 955,822 - -0.5 955,921 + -1.1 955,975 + +0.5 955,988 - -0.5 956,006 + +0.5 956,006 + -1.1 956,014 + -1.5 956,105 + +0.5 956,202 - Dsui_0928 0.13 -1.8 956,217 + Dsui_0928 0.14 -0.5 956,274 - Dsui_0928 0.18 -1.1 956,295 - Dsui_0928 0.20 -1.1 956,301 + Dsui_0928 0.20 -2.3 956,346 + Dsui_0928 0.23 -0.3 956,376 + Dsui_0928 0.25 -1.1 956,388 - Dsui_0928 0.26 +0.5 956,403 - Dsui_0928 0.27 +0.5 956,500 - Dsui_0928 0.34 +0.5 956,670 + +0.5 956,692 - Dsui_0928 0.48 +0.5 956,719 + Dsui_0928 0.50 -0.5 956,817 - Dsui_0928 0.56 -2.1
Or see this region's nucleotide sequence