Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0897 and Dsui_0898 overlap by 1 nucleotides Dsui_0898 and Dsui_0899 are separated by 327 nucleotides
Dsui_0897: Dsui_0897 - RND family efflux transporter, MFP subunit, at 914,568 to 915,755
_0897
Dsui_0898: Dsui_0898 - outer membrane protein, at 915,755 to 917,002
_0898
Dsui_0899: Dsui_0899 - D-alanyl-D-alanine carboxypeptidase, at 917,330 to 918,499
_0899
Position (kb)
915
916
917
918 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 914.802 kb on - strand, within Dsui_0897 at 914.874 kb on + strand at 914.876 kb on + strand, within Dsui_0897 at 914.889 kb on + strand at 914.897 kb on + strand, within Dsui_0897 at 914.983 kb on + strand at 915.059 kb on - strand, within Dsui_0897 at 915.079 kb on + strand at 915.112 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.421 kb on + strand, within Dsui_0897 at 915.428 kb on + strand at 915.563 kb on - strand, within Dsui_0897 at 915.726 kb on + strand at 915.773 kb on + strand at 915.829 kb on + strand at 915.875 kb on - strand at 915.883 kb on + strand, within Dsui_0898 at 915.937 kb on + strand, within Dsui_0898 at 915.945 kb on - strand at 915.956 kb on - strand, within Dsui_0898 at 915.968 kb on + strand, within Dsui_0898 at 915.981 kb on + strand, within Dsui_0898 at 916.039 kb on - strand, within Dsui_0898 at 916.044 kb on - strand, within Dsui_0898 at 916.131 kb on - strand, within Dsui_0898 at 916.137 kb on - strand, within Dsui_0898 at 916.198 kb on - strand, within Dsui_0898 at 916.199 kb on - strand at 916.204 kb on + strand, within Dsui_0898 at 916.212 kb on - strand, within Dsui_0898 at 916.263 kb on + strand, within Dsui_0898 at 916.287 kb on - strand, within Dsui_0898 at 916.302 kb on + strand, within Dsui_0898 at 916.310 kb on - strand, within Dsui_0898 at 916.330 kb on + strand, within Dsui_0898 at 916.340 kb on - strand, within Dsui_0898 at 916.342 kb on + strand, within Dsui_0898 at 916.407 kb on + strand, within Dsui_0898 at 916.417 kb on + strand, within Dsui_0898 at 916.437 kb on - strand at 916.455 kb on + strand, within Dsui_0898 at 916.476 kb on + strand, within Dsui_0898 at 916.476 kb on + strand, within Dsui_0898 at 916.592 kb on + strand, within Dsui_0898 at 916.615 kb on + strand at 916.623 kb on - strand, within Dsui_0898 at 916.667 kb on - strand, within Dsui_0898 at 916.693 kb on - strand at 916.720 kb on + strand, within Dsui_0898 at 916.732 kb on + strand, within Dsui_0898 at 916.784 kb on - strand, within Dsui_0898 at 916.899 kb on + strand at 916.899 kb on + strand at 916.921 kb on + strand at 916.929 kb on + strand at 916.953 kb on - strand at 916.982 kb on - strand at 916.984 kb on - strand at 917.039 kb on + strand at 917.040 kb on - strand at 917.047 kb on - strand at 917.064 kb on - strand at 917.180 kb on + strand at 917.188 kb on - strand at 917.233 kb on + strand at 917.313 kb on + strand at 917.353 kb on + strand at 917.386 kb on - strand at 917.428 kb on + strand at 917.456 kb on + strand, within Dsui_0899 at 917.461 kb on + strand, within Dsui_0899 at 917.484 kb on + strand, within Dsui_0899 at 917.550 kb on - strand at 917.556 kb on + strand, within Dsui_0899 at 917.562 kb on + strand, within Dsui_0899 at 917.566 kb on + strand, within Dsui_0899 at 917.602 kb on + strand, within Dsui_0899 at 917.616 kb on - strand, within Dsui_0899 at 917.731 kb on - strand, within Dsui_0899 at 917.752 kb on - strand, within Dsui_0899 at 917.805 kb on + strand, within Dsui_0899 at 917.932 kb on - strand, within Dsui_0899 at 917.935 kb on + strand, within Dsui_0899 at 917.967 kb on + strand, within Dsui_0899 at 917.977 kb on + strand, within Dsui_0899 at 917.985 kb on - strand, within Dsui_0899 at 917.985 kb on - strand, within Dsui_0899 at 917.985 kb on - strand, within Dsui_0899 at 917.995 kb on + strand, within Dsui_0899
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 914,802 - Dsui_0897 0.20 -1.5 914,874 + -0.5 914,876 + Dsui_0897 0.26 -0.5 914,889 + -1.9 914,897 + Dsui_0897 0.28 -1.9 914,983 + +0.5 915,059 - Dsui_0897 0.41 -0.5 915,079 + +0.5 915,112 - Dsui_0897 0.46 -0.5 915,340 - Dsui_0897 0.65 -2.1 915,340 - Dsui_0897 0.65 -1.9 915,421 + Dsui_0897 0.72 -1.5 915,428 + +0.5 915,563 - Dsui_0897 0.84 +0.5 915,726 + -1.5 915,773 + -0.5 915,829 + -0.5 915,875 - +0.5 915,883 + Dsui_0898 0.10 +0.5 915,937 + Dsui_0898 0.15 -1.5 915,945 - +0.5 915,956 - Dsui_0898 0.16 -1.5 915,968 + Dsui_0898 0.17 +0.5 915,981 + Dsui_0898 0.18 -1.1 916,039 - Dsui_0898 0.23 -1.1 916,044 - Dsui_0898 0.23 -2.1 916,131 - Dsui_0898 0.30 -2.3 916,137 - Dsui_0898 0.31 -1.1 916,198 - Dsui_0898 0.35 -0.5 916,199 - +0.5 916,204 + Dsui_0898 0.36 +0.5 916,212 - Dsui_0898 0.37 -0.5 916,263 + Dsui_0898 0.41 -3.2 916,287 - Dsui_0898 0.43 -0.5 916,302 + Dsui_0898 0.44 +0.5 916,310 - Dsui_0898 0.44 -2.0 916,330 + Dsui_0898 0.46 -0.5 916,340 - Dsui_0898 0.47 +0.5 916,342 + Dsui_0898 0.47 +0.5 916,407 + Dsui_0898 0.52 +0.5 916,417 + Dsui_0898 0.53 +0.5 916,437 - +0.5 916,455 + Dsui_0898 0.56 +0.5 916,476 + Dsui_0898 0.58 -2.7 916,476 + Dsui_0898 0.58 +0.5 916,592 + Dsui_0898 0.67 -0.5 916,615 + +0.5 916,623 - Dsui_0898 0.70 -1.9 916,667 - Dsui_0898 0.73 -1.1 916,693 - +0.5 916,720 + Dsui_0898 0.77 -1.1 916,732 + Dsui_0898 0.78 -2.7 916,784 - Dsui_0898 0.82 -2.5 916,899 + -1.1 916,899 + +0.5 916,921 + -1.1 916,929 + -0.3 916,953 - +0.5 916,982 - +0.5 916,984 - +0.5 917,039 + -0.5 917,040 - -1.9 917,047 - +0.5 917,064 - -1.1 917,180 + -0.5 917,188 - +0.5 917,233 + -1.9 917,313 + +0.0 917,353 + -0.3 917,386 - -1.5 917,428 + -0.5 917,456 + Dsui_0899 0.11 +0.8 917,461 + Dsui_0899 0.11 -0.3 917,484 + Dsui_0899 0.13 -0.4 917,550 - +0.5 917,556 + Dsui_0899 0.19 -0.4 917,562 + Dsui_0899 0.20 -0.5 917,566 + Dsui_0899 0.20 -0.8 917,602 + Dsui_0899 0.23 -0.4 917,616 - Dsui_0899 0.24 -3.7 917,731 - Dsui_0899 0.34 -2.1 917,752 - Dsui_0899 0.36 +0.5 917,805 + Dsui_0899 0.41 +0.5 917,932 - Dsui_0899 0.51 -1.1 917,935 + Dsui_0899 0.52 +0.3 917,967 + Dsui_0899 0.54 -0.7 917,977 + Dsui_0899 0.55 -0.6 917,985 - Dsui_0899 0.56 -0.5 917,985 - Dsui_0899 0.56 -2.9 917,985 - Dsui_0899 0.56 -0.5 917,995 + Dsui_0899 0.57 -3.2
Or see this region's nucleotide sequence