Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0857 and Dsui_0858 are separated by 57 nucleotides Dsui_0858 and Dsui_0859 are separated by 83 nucleotides Dsui_0859 and Dsui_0860 are separated by 5 nucleotides Dsui_0860 and Dsui_0861 are separated by 33 nucleotides
Dsui_0857: Dsui_0857 - ATP synthase, F1 beta subunit, at 872,721 to 874,124
_0857
Dsui_0858: Dsui_0858 - ATP synthase, F1 epsilon subunit, at 874,182 to 874,604
_0858
Dsui_0859: Dsui_0859 - hypothetical protein, at 874,688 to 875,263
_0859
Dsui_0860: Dsui_0860 - hypothetical protein, at 875,269 to 876,180
_0860
Dsui_0861: Dsui_0861 - ubiquinone/menaquinone biosynthesis methyltransferase, at 876,214 to 876,948
_0861
Position (kb) 874
875
876 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 874.853 kb on - strand, within Dsui_0859 at 874.923 kb on + strand at 875.033 kb on - strand, within Dsui_0859 at 875.267 kb on + strand at 875.321 kb on + strand at 875.375 kb on + strand, within Dsui_0860 at 875.447 kb on + strand, within Dsui_0860 at 875.563 kb on - strand, within Dsui_0860 at 875.591 kb on + strand at 875.599 kb on - strand, within Dsui_0860 at 875.652 kb on - strand, within Dsui_0860 at 875.866 kb on - strand, within Dsui_0860 at 876.133 kb on + strand at 876.154 kb on + strand at 876.164 kb on + strand at 876.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 874,853 - Dsui_0859 0.29 +4.8 874,923 + +0.5 875,033 - Dsui_0859 0.60 +1.4 875,267 + -0.1 875,321 + -1.1 875,375 + Dsui_0860 0.12 +0.5 875,447 + Dsui_0860 0.20 -1.1 875,563 - Dsui_0860 0.32 -0.0 875,591 + -0.5 875,599 - Dsui_0860 0.36 -0.3 875,652 - Dsui_0860 0.42 +0.4 875,866 - Dsui_0860 0.65 -0.1 876,133 + -0.5 876,154 + +0.5 876,164 + +0.5 876,164 + -2.1
Or see this region's nucleotide sequence