Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0842 and Dsui_0843 overlap by 4 nucleotides Dsui_0843 and Dsui_0844 are separated by 79 nucleotides
Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893
_0842
Dsui_0843: Dsui_0843 - branched-chain amino acid ABC-type transport system, permease component, at 858,890 to 859,939
_0843
Dsui_0844: Dsui_0844 - ABC-type branched-chain amino acid transport system, periplasmic component, at 860,019 to 861,173
_0844
Position (kb)
858
859
860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 857.993 kb on - strand, within Dsui_0842 at 858.084 kb on - strand, within Dsui_0842 at 858.128 kb on - strand, within Dsui_0842 at 858.133 kb on + strand at 858.164 kb on - strand, within Dsui_0842 at 858.300 kb on - strand, within Dsui_0842 at 858.300 kb on - strand, within Dsui_0842 at 858.336 kb on + strand, within Dsui_0842 at 858.415 kb on - strand, within Dsui_0842 at 858.415 kb on - strand, within Dsui_0842 at 858.453 kb on - strand, within Dsui_0842 at 858.455 kb on - strand, within Dsui_0842 at 858.521 kb on - strand, within Dsui_0842 at 858.523 kb on - strand, within Dsui_0842 at 858.528 kb on + strand, within Dsui_0842 at 858.541 kb on - strand, within Dsui_0842 at 858.549 kb on - strand, within Dsui_0842 at 858.586 kb on + strand, within Dsui_0842 at 858.622 kb on - strand, within Dsui_0842 at 858.638 kb on + strand, within Dsui_0842 at 858.794 kb on - strand at 858.808 kb on - strand at 858.913 kb on + strand at 858.921 kb on - strand at 858.927 kb on - strand at 859.215 kb on + strand, within Dsui_0843 at 859.260 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.266 kb on - strand, within Dsui_0843 at 859.268 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.346 kb on - strand, within Dsui_0843 at 859.397 kb on + strand, within Dsui_0843 at 859.426 kb on + strand, within Dsui_0843 at 859.515 kb on + strand, within Dsui_0843 at 859.586 kb on + strand, within Dsui_0843 at 859.637 kb on - strand, within Dsui_0843 at 859.696 kb on - strand, within Dsui_0843 at 859.696 kb on - strand, within Dsui_0843 at 859.714 kb on + strand, within Dsui_0843 at 859.722 kb on - strand, within Dsui_0843 at 859.744 kb on + strand, within Dsui_0843 at 859.752 kb on - strand, within Dsui_0843 at 859.786 kb on + strand, within Dsui_0843 at 859.786 kb on + strand, within Dsui_0843 at 859.794 kb on - strand, within Dsui_0843 at 859.795 kb on - strand, within Dsui_0843 at 859.861 kb on + strand at 859.861 kb on + strand at 859.959 kb on + strand at 859.967 kb on - strand at 859.969 kb on - strand at 860.000 kb on - strand at 860.030 kb on + strand at 860.038 kb on - strand at 860.075 kb on + strand at 860.157 kb on + strand, within Dsui_0844 at 860.177 kb on + strand, within Dsui_0844 at 860.188 kb on + strand, within Dsui_0844 at 860.196 kb on - strand, within Dsui_0844 at 860.199 kb on + strand, within Dsui_0844 at 860.240 kb on + strand, within Dsui_0844 at 860.248 kb on - strand, within Dsui_0844 at 860.283 kb on + strand, within Dsui_0844 at 860.290 kb on + strand, within Dsui_0844 at 860.317 kb on - strand, within Dsui_0844 at 860.399 kb on - strand, within Dsui_0844 at 860.467 kb on + strand, within Dsui_0844 at 860.475 kb on - strand, within Dsui_0844 at 860.567 kb on - strand, within Dsui_0844 at 860.653 kb on + strand, within Dsui_0844 at 860.709 kb on + strand, within Dsui_0844 at 860.768 kb on + strand, within Dsui_0844
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 857,993 - Dsui_0842 0.49 -1.0 858,084 - Dsui_0842 0.55 -1.3 858,128 - Dsui_0842 0.57 +0.6 858,133 + +0.5 858,164 - Dsui_0842 0.59 -2.8 858,300 - Dsui_0842 0.67 -0.4 858,300 - Dsui_0842 0.67 -0.3 858,336 + Dsui_0842 0.69 -0.5 858,415 - Dsui_0842 0.73 -0.9 858,415 - Dsui_0842 0.73 -1.0 858,453 - Dsui_0842 0.75 -1.0 858,455 - Dsui_0842 0.75 -0.6 858,521 - Dsui_0842 0.79 -1.0 858,523 - Dsui_0842 0.79 -1.3 858,528 + Dsui_0842 0.79 +0.5 858,541 - Dsui_0842 0.80 -1.6 858,549 - Dsui_0842 0.81 -1.1 858,586 + Dsui_0842 0.83 -1.1 858,622 - Dsui_0842 0.85 -1.0 858,638 + Dsui_0842 0.86 -0.5 858,794 - -1.0 858,808 - -0.8 858,913 + -1.1 858,921 - -0.5 858,927 - -0.9 859,215 + Dsui_0843 0.31 -1.5 859,260 + Dsui_0843 0.35 +0.5 859,265 + Dsui_0843 0.36 -0.5 859,265 + Dsui_0843 0.36 -1.1 859,265 + Dsui_0843 0.36 +2.1 859,265 + Dsui_0843 0.36 +0.5 859,265 + Dsui_0843 0.36 -2.5 859,265 + Dsui_0843 0.36 -0.6 859,266 - Dsui_0843 0.36 -1.3 859,268 - Dsui_0843 0.36 -0.9 859,273 - Dsui_0843 0.36 -1.1 859,273 - Dsui_0843 0.36 -0.9 859,273 - Dsui_0843 0.36 -1.8 859,346 - Dsui_0843 0.43 -0.1 859,397 + Dsui_0843 0.48 -1.1 859,426 + Dsui_0843 0.51 -0.5 859,515 + Dsui_0843 0.60 -0.1 859,586 + Dsui_0843 0.66 -1.5 859,637 - Dsui_0843 0.71 -0.2 859,696 - Dsui_0843 0.77 -0.6 859,696 - Dsui_0843 0.77 -1.2 859,714 + Dsui_0843 0.78 +0.5 859,722 - Dsui_0843 0.79 -0.6 859,744 + Dsui_0843 0.81 -1.5 859,752 - Dsui_0843 0.82 -1.1 859,786 + Dsui_0843 0.85 -1.1 859,786 + Dsui_0843 0.85 -1.6 859,794 - Dsui_0843 0.86 -1.1 859,795 - Dsui_0843 0.86 -1.6 859,861 + +0.5 859,861 + -1.9 859,959 + -1.3 859,967 - -0.3 859,969 - -0.5 860,000 - -0.9 860,030 + -2.1 860,038 - -0.3 860,075 + -2.1 860,157 + Dsui_0844 0.12 +0.5 860,177 + Dsui_0844 0.14 +1.5 860,188 + Dsui_0844 0.15 -0.3 860,196 - Dsui_0844 0.15 -0.6 860,199 + Dsui_0844 0.16 +0.5 860,240 + Dsui_0844 0.19 -2.5 860,248 - Dsui_0844 0.20 -0.9 860,283 + Dsui_0844 0.23 -3.4 860,290 + Dsui_0844 0.23 -0.5 860,317 - Dsui_0844 0.26 -0.9 860,399 - Dsui_0844 0.33 -1.2 860,467 + Dsui_0844 0.39 +1.1 860,475 - Dsui_0844 0.39 -1.0 860,567 - Dsui_0844 0.47 -1.4 860,653 + Dsui_0844 0.55 -0.5 860,709 + Dsui_0844 0.60 +0.5 860,768 + Dsui_0844 0.65 +0.5
Or see this region's nucleotide sequence