Strain Fitness in Dechlorosoma suillum PS around Dsui_0784

Experiment: ALP with Fusidic 0.007 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0782 and Dsui_0783 are separated by 91 nucleotidesDsui_0783 and Dsui_0784 are separated by 1 nucleotidesDsui_0784 and Dsui_0785 are separated by 8 nucleotidesDsui_0785 and Dsui_0786 are separated by 117 nucleotides Dsui_0782: Dsui_0782 - N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form, at 789,809 to 790,768 _0782 Dsui_0783: Dsui_0783 - acetyltransferase, N-acetylglutamate synthase, at 790,860 to 791,336 _0783 Dsui_0784: Dsui_0784 - hypothetical protein, at 791,338 to 792,546 _0784 Dsui_0785: Dsui_0785 - hypothetical protein, at 792,555 to 793,115 _0785 Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123 _0786 Position (kb) 791 792 793Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 790.792 kb on + strandat 790.830 kb on + strandat 790.835 kb on + strandat 790.835 kb on + strandat 790.843 kb on - strandat 790.843 kb on - strandat 790.843 kb on - strandat 790.843 kb on - strandat 790.848 kb on - strandat 790.848 kb on - strandat 790.849 kb on - strandat 790.878 kb on - strandat 790.890 kb on + strandat 790.897 kb on + strandat 790.903 kb on + strandat 790.917 kb on + strand, within Dsui_0783at 790.925 kb on - strand, within Dsui_0783at 790.925 kb on - strand, within Dsui_0783at 790.983 kb on + strand, within Dsui_0783at 790.992 kb on - strand, within Dsui_0783at 791.003 kb on - strand, within Dsui_0783at 791.017 kb on + strand, within Dsui_0783at 791.017 kb on + strand, within Dsui_0783at 791.025 kb on - strand, within Dsui_0783at 791.025 kb on - strand, within Dsui_0783at 791.025 kb on - strand, within Dsui_0783at 791.025 kb on - strand, within Dsui_0783at 791.062 kb on + strand, within Dsui_0783at 791.075 kb on - strand, within Dsui_0783at 791.090 kb on - strand, within Dsui_0783at 791.104 kb on - strand, within Dsui_0783at 791.106 kb on - strand, within Dsui_0783at 791.112 kb on - strand, within Dsui_0783at 791.134 kb on + strand, within Dsui_0783at 791.142 kb on - strand, within Dsui_0783at 791.149 kb on + strand, within Dsui_0783at 791.172 kb on - strand, within Dsui_0783at 791.176 kb on + strand, within Dsui_0783at 791.181 kb on + strand, within Dsui_0783at 791.214 kb on - strand, within Dsui_0783at 791.242 kb on + strand, within Dsui_0783at 791.242 kb on + strand, within Dsui_0783at 791.250 kb on - strand, within Dsui_0783at 791.262 kb on + strand, within Dsui_0783at 791.262 kb on + strand, within Dsui_0783at 791.262 kb on + strand, within Dsui_0783at 791.262 kb on + strand, within Dsui_0783at 791.262 kb on + strand, within Dsui_0783at 791.267 kb on + strand, within Dsui_0783at 791.267 kb on + strand, within Dsui_0783at 791.270 kb on - strand, within Dsui_0783at 791.275 kb on - strand, within Dsui_0783at 791.275 kb on - strand, within Dsui_0783at 791.275 kb on - strand, within Dsui_0783at 791.329 kb on + strandat 791.333 kb on - strandat 791.382 kb on + strandat 791.467 kb on - strand, within Dsui_0784at 791.623 kb on + strand, within Dsui_0784at 791.631 kb on + strand, within Dsui_0784at 791.641 kb on - strand, within Dsui_0784at 791.757 kb on + strand, within Dsui_0784at 791.783 kb on - strand, within Dsui_0784at 791.809 kb on - strand, within Dsui_0784at 791.819 kb on - strand, within Dsui_0784at 791.853 kb on - strand, within Dsui_0784at 791.853 kb on - strand, within Dsui_0784at 791.915 kb on - strand, within Dsui_0784at 791.922 kb on - strand, within Dsui_0784at 791.977 kb on + strand, within Dsui_0784at 791.987 kb on - strand, within Dsui_0784at 791.987 kb on - strand, within Dsui_0784at 792.014 kb on + strand, within Dsui_0784at 792.081 kb on + strandat 792.110 kb on + strand, within Dsui_0784at 792.129 kb on + strand, within Dsui_0784at 792.129 kb on - strand, within Dsui_0784at 792.134 kb on - strand, within Dsui_0784at 792.172 kb on + strand, within Dsui_0784at 792.179 kb on + strand, within Dsui_0784at 792.191 kb on + strand, within Dsui_0784at 792.214 kb on - strand, within Dsui_0784at 792.218 kb on - strand, within Dsui_0784at 792.242 kb on - strand, within Dsui_0784at 792.242 kb on - strand, within Dsui_0784at 792.246 kb on + strand, within Dsui_0784at 792.254 kb on - strand, within Dsui_0784at 792.312 kb on + strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.346 kb on - strand, within Dsui_0784at 792.438 kb on + strandat 792.446 kb on - strandat 792.512 kb on - strandat 792.577 kb on - strandat 792.577 kb on - strandat 792.595 kb on - strandat 792.600 kb on - strandat 792.641 kb on - strand, within Dsui_0785at 792.643 kb on + strand, within Dsui_0785at 792.663 kb on + strand, within Dsui_0785at 792.714 kb on + strand, within Dsui_0785at 792.727 kb on - strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.774 kb on + strandat 792.774 kb on + strand, within Dsui_0785at 792.856 kb on - strand, within Dsui_0785at 792.923 kb on - strand, within Dsui_0785at 792.960 kb on + strand, within Dsui_0785at 793.015 kb on + strand, within Dsui_0785at 793.124 kb on - strandat 793.154 kb on - strandat 793.169 kb on + strandat 793.287 kb on + strandat 793.326 kb on - strand, within Dsui_0786at 793.351 kb on - strand, within Dsui_0786at 793.354 kb on - strandat 793.356 kb on - strand, within Dsui_0786at 793.427 kb on - strand, within Dsui_0786at 793.462 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
remove
790,792 + -0.3
790,830 + -0.4
790,835 + +0.0
790,835 + +1.5
790,843 - +0.6
790,843 - +0.1
790,843 - -0.1
790,843 - -0.2
790,848 - -0.2
790,848 - -0.0
790,849 - -0.1
790,878 - -2.5
790,890 + +0.9
790,897 + -0.1
790,903 + +0.5
790,917 + Dsui_0783 0.12 +0.2
790,925 - Dsui_0783 0.14 -0.9
790,925 - Dsui_0783 0.14 -0.3
790,983 + Dsui_0783 0.26 -2.5
790,992 - Dsui_0783 0.28 +0.3
791,003 - Dsui_0783 0.30 +0.2
791,017 + Dsui_0783 0.33 -0.7
791,017 + Dsui_0783 0.33 +0.5
791,025 - Dsui_0783 0.35 +0.8
791,025 - Dsui_0783 0.35 +0.3
791,025 - Dsui_0783 0.35 -0.5
791,025 - Dsui_0783 0.35 -0.2
791,062 + Dsui_0783 0.42 -1.9
791,075 - Dsui_0783 0.45 +0.6
791,090 - Dsui_0783 0.48 +0.1
791,104 - Dsui_0783 0.51 +0.5
791,106 - Dsui_0783 0.52 +0.1
791,112 - Dsui_0783 0.53 +0.0
791,134 + Dsui_0783 0.57 -0.5
791,142 - Dsui_0783 0.59 +0.1
791,149 + Dsui_0783 0.61 -0.5
791,172 - Dsui_0783 0.65 -0.2
791,176 + Dsui_0783 0.66 +0.5
791,181 + Dsui_0783 0.67 -2.4
791,214 - Dsui_0783 0.74 -0.2
791,242 + Dsui_0783 0.80 +0.5
791,242 + Dsui_0783 0.80 -0.9
791,250 - Dsui_0783 0.82 -0.1
791,262 + Dsui_0783 0.84 +0.5
791,262 + Dsui_0783 0.84 -2.7
791,262 + Dsui_0783 0.84 -3.8
791,262 + Dsui_0783 0.84 +0.5
791,262 + Dsui_0783 0.84 -1.5
791,267 + Dsui_0783 0.85 -1.9
791,267 + Dsui_0783 0.85 +0.5
791,270 - Dsui_0783 0.86 -0.3
791,275 - Dsui_0783 0.87 +0.2
791,275 - Dsui_0783 0.87 +0.3
791,275 - Dsui_0783 0.87 -0.4
791,329 + +0.5
791,333 - -0.3
791,382 + -0.5
791,467 - Dsui_0784 0.11 +0.3
791,623 + Dsui_0784 0.24 +0.5
791,631 + Dsui_0784 0.24 -0.5
791,641 - Dsui_0784 0.25 +0.7
791,757 + Dsui_0784 0.35 -1.1
791,783 - Dsui_0784 0.37 -0.3
791,809 - Dsui_0784 0.39 -1.0
791,819 - Dsui_0784 0.40 -0.1
791,853 - Dsui_0784 0.43 -0.1
791,853 - Dsui_0784 0.43 -0.3
791,915 - Dsui_0784 0.48 +0.2
791,922 - Dsui_0784 0.48 -0.4
791,977 + Dsui_0784 0.53 +0.5
791,987 - Dsui_0784 0.54 +1.1
791,987 - Dsui_0784 0.54 +0.8
792,014 + Dsui_0784 0.56 -1.1
792,081 + +0.5
792,110 + Dsui_0784 0.64 -0.5
792,129 + Dsui_0784 0.65 -1.5
792,129 - Dsui_0784 0.65 +0.1
792,134 - Dsui_0784 0.66 -0.3
792,172 + Dsui_0784 0.69 +0.5
792,179 + Dsui_0784 0.70 +0.5
792,191 + Dsui_0784 0.71 -0.5
792,214 - Dsui_0784 0.72 -0.3
792,218 - Dsui_0784 0.73 +0.3
792,242 - Dsui_0784 0.75 +1.5
792,242 - Dsui_0784 0.75 +0.1
792,246 + Dsui_0784 0.75 -1.5
792,254 - Dsui_0784 0.76 +0.4
792,312 + Dsui_0784 0.81 -1.1
792,320 - Dsui_0784 0.81 -0.4
792,320 - Dsui_0784 0.81 -0.0
792,346 - Dsui_0784 0.83 +0.2
792,438 + -0.5
792,446 - +1.1
792,512 - +0.2
792,577 - -1.0
792,577 - -0.6
792,595 - +0.3
792,600 - +0.1
792,641 - Dsui_0785 0.15 -0.5
792,643 + Dsui_0785 0.16 -3.4
792,663 + Dsui_0785 0.19 -2.5
792,714 + Dsui_0785 0.28 -1.9
792,727 - Dsui_0785 0.31 -0.1
792,746 + Dsui_0785 0.34 -0.5
792,746 + Dsui_0785 0.34 -2.5
792,754 - Dsui_0785 0.35 -0.1
792,754 - Dsui_0785 0.35 -0.3
792,754 - Dsui_0785 0.35 -0.3
792,774 + +0.5
792,774 + Dsui_0785 0.39 +0.5
792,856 - Dsui_0785 0.54 -0.1
792,923 - Dsui_0785 0.66 +0.1
792,960 + Dsui_0785 0.72 +0.5
793,015 + Dsui_0785 0.82 +0.5
793,124 - -0.1
793,154 - -0.1
793,169 + -0.5
793,287 + -0.5
793,326 - Dsui_0786 0.10 -1.9
793,351 - Dsui_0786 0.13 +0.5
793,354 - +0.5
793,356 - Dsui_0786 0.14 -0.5
793,427 - Dsui_0786 0.22 -0.4
793,462 - Dsui_0786 0.26 +0.5
793,476 - Dsui_0786 0.27 +1.0
793,476 - Dsui_0786 0.27 +2.0
793,502 + Dsui_0786 0.30 -0.6
793,502 + Dsui_0786 0.30 +0.6

Or see this region's nucleotide sequence