Strain Fitness in Dechlorosoma suillum PS around Dsui_0761

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0760 and Dsui_0761 are separated by 99 nucleotidesDsui_0761 and Dsui_0762 are separated by 7 nucleotides Dsui_0760: Dsui_0760 - diguanylate cyclase (GGDEF) domain-containing protein, at 760,145 to 762,571 _0760 Dsui_0761: Dsui_0761 - phosphoserine phosphatase/homoserine phosphotransferase, at 762,671 to 763,279 _0761 Dsui_0762: Dsui_0762 - formyltetrahydrofolate deformylase, at 763,287 to 764,147 _0762 Position (kb) 762 763 764Strain fitness (log2 ratio) -1 0 1 2at 761.744 kb on - strandat 761.823 kb on - strandat 761.848 kb on - strand, within Dsui_0760at 761.946 kb on + strand, within Dsui_0760at 762.012 kb on - strandat 762.013 kb on - strandat 762.124 kb on - strand, within Dsui_0760at 762.150 kb on - strand, within Dsui_0760at 762.157 kb on + strand, within Dsui_0760at 762.212 kb on - strand, within Dsui_0760at 762.230 kb on - strandat 762.267 kb on + strandat 762.307 kb on + strandat 762.473 kb on - strandat 762.507 kb on - strandat 762.528 kb on + strandat 762.608 kb on + strandat 762.615 kb on + strandat 764.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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761,744 - +0.5
761,823 - +0.5
761,848 - Dsui_0760 0.70 -0.5
761,946 + Dsui_0760 0.74 -0.9
762,012 - +0.5
762,013 - +0.5
762,124 - Dsui_0760 0.82 +0.5
762,150 - Dsui_0760 0.83 -0.5
762,157 + Dsui_0760 0.83 -0.6
762,212 - Dsui_0760 0.85 -0.4
762,230 - +0.5
762,267 + +2.0
762,307 + +0.5
762,473 - +0.5
762,507 - -0.5
762,528 + +0.1
762,608 + -0.5
762,615 + -1.1
764,273 + +0.5

Or see this region's nucleotide sequence