Strain Fitness in Dechlorosoma suillum PS around Dsui_0760

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0758 and Dsui_0759 are separated by 63 nucleotidesDsui_0759 and Dsui_0760 are separated by 7 nucleotidesDsui_0760 and Dsui_0761 are separated by 99 nucleotidesDsui_0761 and Dsui_0762 are separated by 7 nucleotides Dsui_0758: Dsui_0758 - ATPase component of ABC transporters with duplicated ATPase domain, at 757,333 to 759,237 _0758 Dsui_0759: Dsui_0759 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 759,301 to 760,137 _0759 Dsui_0760: Dsui_0760 - diguanylate cyclase (GGDEF) domain-containing protein, at 760,145 to 762,571 _0760 Dsui_0761: Dsui_0761 - phosphoserine phosphatase/homoserine phosphotransferase, at 762,671 to 763,279 _0761 Dsui_0762: Dsui_0762 - formyltetrahydrofolate deformylase, at 763,287 to 764,147 _0762 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -2 -1 0 1 2at 759.167 kb on - strandat 759.207 kb on - strandat 759.268 kb on + strandat 759.294 kb on - strandat 759.380 kb on - strandat 759.387 kb on + strand, within Dsui_0759at 759.418 kb on - strand, within Dsui_0759at 759.428 kb on + strand, within Dsui_0759at 759.454 kb on - strand, within Dsui_0759at 759.471 kb on - strand, within Dsui_0759at 759.509 kb on + strand, within Dsui_0759at 759.516 kb on - strand, within Dsui_0759at 759.565 kb on - strand, within Dsui_0759at 759.607 kb on - strand, within Dsui_0759at 759.665 kb on - strand, within Dsui_0759at 759.668 kb on + strand, within Dsui_0759at 759.676 kb on - strand, within Dsui_0759at 759.713 kb on + strand, within Dsui_0759at 759.713 kb on + strand, within Dsui_0759at 759.728 kb on + strand, within Dsui_0759at 759.812 kb on - strand, within Dsui_0759at 759.837 kb on + strand, within Dsui_0759at 759.845 kb on - strand, within Dsui_0759at 759.878 kb on - strand, within Dsui_0759at 759.929 kb on + strand, within Dsui_0759at 759.939 kb on + strand, within Dsui_0759at 759.986 kb on + strand, within Dsui_0759at 760.004 kb on - strand, within Dsui_0759at 760.107 kb on + strandat 760.115 kb on - strandat 760.148 kb on + strandat 760.150 kb on - strandat 760.171 kb on - strandat 760.189 kb on - strandat 760.225 kb on + strandat 760.241 kb on - strandat 760.258 kb on + strandat 760.274 kb on - strandat 760.426 kb on - strandat 760.570 kb on - strand, within Dsui_0760at 760.572 kb on + strand, within Dsui_0760at 760.672 kb on - strand, within Dsui_0760at 760.715 kb on - strand, within Dsui_0760at 760.904 kb on + strand, within Dsui_0760at 760.924 kb on - strandat 760.937 kb on + strand, within Dsui_0760at 761.046 kb on + strand, within Dsui_0760at 761.073 kb on + strand, within Dsui_0760at 761.077 kb on + strand, within Dsui_0760at 761.088 kb on + strand, within Dsui_0760at 761.165 kb on + strand, within Dsui_0760at 761.193 kb on + strand, within Dsui_0760at 761.193 kb on + strand, within Dsui_0760at 761.193 kb on + strand, within Dsui_0760at 761.201 kb on - strandat 761.201 kb on - strand, within Dsui_0760at 761.255 kb on - strandat 761.278 kb on + strand, within Dsui_0760at 761.278 kb on + strand, within Dsui_0760at 761.286 kb on - strand, within Dsui_0760at 761.319 kb on - strand, within Dsui_0760at 761.319 kb on - strandat 761.319 kb on - strand, within Dsui_0760at 761.397 kb on + strand, within Dsui_0760at 761.652 kb on + strandat 761.660 kb on - strand, within Dsui_0760at 761.660 kb on - strand, within Dsui_0760at 761.744 kb on - strandat 761.823 kb on - strandat 761.848 kb on - strand, within Dsui_0760at 761.946 kb on + strand, within Dsui_0760at 762.012 kb on - strandat 762.013 kb on - strandat 762.124 kb on - strand, within Dsui_0760at 762.150 kb on - strand, within Dsui_0760at 762.157 kb on + strand, within Dsui_0760at 762.212 kb on - strand, within Dsui_0760at 762.230 kb on - strandat 762.267 kb on + strandat 762.307 kb on + strandat 762.473 kb on - strandat 762.507 kb on - strandat 762.528 kb on + strandat 762.608 kb on + strandat 762.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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759,167 - -2.4
759,207 - -0.5
759,268 + -0.3
759,294 - +0.5
759,380 - +0.5
759,387 + Dsui_0759 0.10 +0.0
759,418 - Dsui_0759 0.14 -0.5
759,428 + Dsui_0759 0.15 -0.2
759,454 - Dsui_0759 0.18 -2.1
759,471 - Dsui_0759 0.20 -2.1
759,509 + Dsui_0759 0.25 +0.0
759,516 - Dsui_0759 0.26 +0.5
759,565 - Dsui_0759 0.32 -2.4
759,607 - Dsui_0759 0.37 -1.1
759,665 - Dsui_0759 0.43 -1.5
759,668 + Dsui_0759 0.44 -0.3
759,676 - Dsui_0759 0.45 -1.9
759,713 + Dsui_0759 0.49 -1.4
759,713 + Dsui_0759 0.49 +0.0
759,728 + Dsui_0759 0.51 -0.0
759,812 - Dsui_0759 0.61 +0.5
759,837 + Dsui_0759 0.64 -0.1
759,845 - Dsui_0759 0.65 +0.5
759,878 - Dsui_0759 0.69 -1.1
759,929 + Dsui_0759 0.75 +0.5
759,939 + Dsui_0759 0.76 +0.2
759,986 + Dsui_0759 0.82 +0.2
760,004 - Dsui_0759 0.84 -1.1
760,107 + -0.2
760,115 - -0.5
760,148 + +0.6
760,150 - +0.5
760,171 - -1.5
760,189 - -2.4
760,225 + +0.2
760,241 - +0.5
760,258 + +0.8
760,274 - -0.5
760,426 - +0.5
760,570 - Dsui_0760 0.18 -2.1
760,572 + Dsui_0760 0.18 +0.0
760,672 - Dsui_0760 0.22 -1.5
760,715 - Dsui_0760 0.23 -1.1
760,904 + Dsui_0760 0.31 +0.1
760,924 - +0.5
760,937 + Dsui_0760 0.33 +0.2
761,046 + Dsui_0760 0.37 +0.3
761,073 + Dsui_0760 0.38 -0.7
761,077 + Dsui_0760 0.38 -0.5
761,088 + Dsui_0760 0.39 -0.4
761,165 + Dsui_0760 0.42 +0.4
761,193 + Dsui_0760 0.43 -0.5
761,193 + Dsui_0760 0.43 -1.0
761,193 + Dsui_0760 0.43 -0.6
761,201 - -0.5
761,201 - Dsui_0760 0.44 -1.5
761,255 - -0.5
761,278 + Dsui_0760 0.47 -0.9
761,278 + Dsui_0760 0.47 -0.9
761,286 - Dsui_0760 0.47 -1.1
761,319 - Dsui_0760 0.48 -1.5
761,319 - +0.5
761,319 - Dsui_0760 0.48 -1.1
761,397 + Dsui_0760 0.52 +0.2
761,652 + +0.5
761,660 - Dsui_0760 0.62 -1.5
761,660 - Dsui_0760 0.62 -2.1
761,744 - +0.5
761,823 - +0.5
761,848 - Dsui_0760 0.70 -0.5
761,946 + Dsui_0760 0.74 -0.9
762,012 - +0.5
762,013 - +0.5
762,124 - Dsui_0760 0.82 +0.5
762,150 - Dsui_0760 0.83 -0.5
762,157 + Dsui_0760 0.83 -0.6
762,212 - Dsui_0760 0.85 -0.4
762,230 - +0.5
762,267 + +2.0
762,307 + +0.5
762,473 - +0.5
762,507 - -0.5
762,528 + +0.1
762,608 + -0.5
762,615 + -1.1

Or see this region's nucleotide sequence