Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0705 and Dsui_0706 are separated by 65 nucleotides Dsui_0706 and Dsui_0707 overlap by 4 nucleotides Dsui_0707 and Dsui_0708 are separated by 124 nucleotides
Dsui_0705: Dsui_0705 - ABC-type (unclassified) transport system, ATPase component, at 700,313 to 701,059
_0705
Dsui_0706: Dsui_0706 - hypothetical protein, at 701,125 to 701,580
_0706
Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599
_0707
Dsui_0708: Dsui_0708 - PAS domain S-box, at 702,724 to 704,817
_0708
Position (kb) 701
702
703 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 701.087 kb on - strand at 701.100 kb on + strand at 701.109 kb on - strand at 701.135 kb on + strand at 701.452 kb on + strand at 701.532 kb on - strand, within Dsui_0706 at 701.532 kb on - strand, within Dsui_0706 at 701.599 kb on + strand at 701.605 kb on + strand at 701.605 kb on + strand at 701.616 kb on + strand at 701.668 kb on + strand at 701.872 kb on - strand, within Dsui_0707 at 702.020 kb on + strand, within Dsui_0707 at 702.046 kb on - strand, within Dsui_0707 at 702.067 kb on + strand at 702.085 kb on - strand, within Dsui_0707 at 702.190 kb on - strand, within Dsui_0707 at 702.344 kb on + strand at 702.380 kb on - strand, within Dsui_0707 at 702.393 kb on + strand, within Dsui_0707 at 702.469 kb on - strand, within Dsui_0707 at 702.585 kb on - strand at 702.634 kb on + strand at 702.665 kb on - strand at 702.673 kb on + strand at 702.774 kb on + strand at 702.798 kb on + strand at 702.890 kb on - strand at 702.966 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.978 kb on - strand, within Dsui_0708 at 702.995 kb on + strand, within Dsui_0708 at 703.073 kb on + strand, within Dsui_0708 at 703.081 kb on - strand at 703.207 kb on - strand at 703.235 kb on + strand, within Dsui_0708 at 703.235 kb on + strand, within Dsui_0708 at 703.315 kb on + strand, within Dsui_0708 at 703.318 kb on - strand at 703.363 kb on + strand, within Dsui_0708 at 703.366 kb on - strand at 703.436 kb on - strand, within Dsui_0708 at 703.489 kb on - strand at 703.489 kb on - strand, within Dsui_0708 at 703.525 kb on + strand, within Dsui_0708 at 703.533 kb on - strand, within Dsui_0708 at 703.562 kb on + strand, within Dsui_0708 at 703.579 kb on - strand at 703.593 kb on - strand, within Dsui_0708
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 701,087 - -0.3 701,100 + -1.6 701,109 - -0.6 701,135 + -0.6 701,452 + -0.6 701,532 - Dsui_0706 0.89 -0.3 701,532 - Dsui_0706 0.89 -0.9 701,599 + -1.2 701,605 + +0.4 701,605 + +0.4 701,616 + -0.6 701,668 + -0.6 701,872 - Dsui_0707 0.29 -1.5 702,020 + Dsui_0707 0.43 +0.4 702,046 - Dsui_0707 0.46 -3.2 702,067 + +0.4 702,085 - Dsui_0707 0.50 -1.5 702,190 - Dsui_0707 0.60 -1.5 702,344 + +0.4 702,380 - Dsui_0707 0.78 -2.5 702,393 + Dsui_0707 0.80 -0.6 702,469 - Dsui_0707 0.87 -0.4 702,585 - -2.0 702,634 + +0.4 702,665 - -0.6 702,673 + -0.6 702,774 + +0.4 702,798 + +0.4 702,890 - +0.4 702,966 - Dsui_0708 0.12 -1.2 702,978 - Dsui_0708 0.12 -1.2 702,978 - Dsui_0708 0.12 -1.9 702,995 + Dsui_0708 0.13 -1.2 703,073 + Dsui_0708 0.17 +0.4 703,081 - -0.6 703,207 - -0.6 703,235 + Dsui_0708 0.24 -1.9 703,235 + Dsui_0708 0.24 -1.2 703,315 + Dsui_0708 0.28 -0.6 703,318 - +0.4 703,363 + Dsui_0708 0.31 -0.6 703,366 - +0.4 703,436 - Dsui_0708 0.34 -2.2 703,489 - -0.6 703,489 - Dsui_0708 0.37 -2.2 703,525 + Dsui_0708 0.38 -0.8 703,533 - Dsui_0708 0.39 -1.2 703,562 + Dsui_0708 0.40 -0.6 703,579 - +0.4 703,593 - Dsui_0708 0.41 +0.4
Or see this region's nucleotide sequence