Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0678 and Dsui_0679 are separated by 2 nucleotides Dsui_0679 and Dsui_0680 are separated by 3 nucleotides Dsui_0680 and Dsui_0681 are separated by 29 nucleotides
Dsui_0678: Dsui_0678 - hypothetical protein, at 676,765 to 677,121
_0678
Dsui_0679: Dsui_0679 - uncharacterized protein SCO1/SenC/PrrC, at 677,124 to 677,798
_0679
Dsui_0680: Dsui_0680 - short-chain dehydrogenase of unknown substrate specificity, at 677,802 to 678,533
_0680
Dsui_0681: Dsui_0681 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 678,563 to 679,372
_0681
Position (kb)
677
678
679 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 676.861 kb on - strand, within Dsui_0678 at 676.875 kb on - strand, within Dsui_0678 at 676.891 kb on + strand, within Dsui_0678 at 676.899 kb on - strand, within Dsui_0678 at 676.934 kb on - strand, within Dsui_0678 at 677.042 kb on + strand, within Dsui_0678 at 677.291 kb on + strand, within Dsui_0679 at 677.377 kb on + strand, within Dsui_0679 at 677.404 kb on + strand, within Dsui_0679 at 677.412 kb on - strand, within Dsui_0679 at 677.468 kb on + strand, within Dsui_0679 at 677.492 kb on - strand, within Dsui_0679 at 677.529 kb on - strand, within Dsui_0679 at 677.610 kb on + strand, within Dsui_0679 at 677.623 kb on - strand, within Dsui_0679 at 677.839 kb on + strand at 677.877 kb on - strand, within Dsui_0680 at 677.894 kb on + strand, within Dsui_0680 at 677.927 kb on + strand, within Dsui_0680 at 677.930 kb on - strand, within Dsui_0680 at 678.075 kb on - strand, within Dsui_0680 at 678.216 kb on - strand, within Dsui_0680 at 678.392 kb on + strand, within Dsui_0680 at 678.445 kb on - strand, within Dsui_0680 at 678.477 kb on + strand at 678.541 kb on + strand at 678.732 kb on - strand at 678.766 kb on + strand, within Dsui_0681 at 678.859 kb on - strand, within Dsui_0681 at 678.885 kb on + strand, within Dsui_0681 at 678.892 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.210 kb on + strand, within Dsui_0681 at 679.236 kb on + strand, within Dsui_0681 at 679.236 kb on + strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.244 kb on - strand, within Dsui_0681 at 679.280 kb on - strand, within Dsui_0681 at 679.331 kb on + strand at 679.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 676,861 - Dsui_0678 0.27 -0.5 676,875 - Dsui_0678 0.31 -1.9 676,891 + Dsui_0678 0.35 -0.2 676,899 - Dsui_0678 0.38 -2.1 676,934 - Dsui_0678 0.47 -0.5 677,042 + Dsui_0678 0.78 -0.8 677,291 + Dsui_0679 0.25 +0.7 677,377 + Dsui_0679 0.37 -1.4 677,404 + Dsui_0679 0.41 -1.0 677,412 - Dsui_0679 0.43 -1.0 677,468 + Dsui_0679 0.51 -1.1 677,492 - Dsui_0679 0.55 -1.5 677,529 - Dsui_0679 0.60 -0.1 677,610 + Dsui_0679 0.72 -1.2 677,623 - Dsui_0679 0.74 -1.1 677,839 + +0.5 677,877 - Dsui_0680 0.10 +0.1 677,894 + Dsui_0680 0.13 +0.1 677,927 + Dsui_0680 0.17 -2.1 677,930 - Dsui_0680 0.17 +1.0 678,075 - Dsui_0680 0.37 +0.2 678,216 - Dsui_0680 0.57 +0.5 678,392 + Dsui_0680 0.81 -1.1 678,445 - Dsui_0680 0.88 +0.3 678,477 + +0.9 678,541 + +0.5 678,732 - -0.5 678,766 + Dsui_0681 0.25 -1.1 678,859 - Dsui_0681 0.37 +0.9 678,885 + Dsui_0681 0.40 -0.7 678,892 + Dsui_0681 0.41 -0.5 679,210 + Dsui_0681 0.80 +0.3 679,210 + Dsui_0681 0.80 -0.9 679,210 + Dsui_0681 0.80 +0.5 679,236 + Dsui_0681 0.83 -0.4 679,236 + Dsui_0681 0.83 -1.1 679,244 - Dsui_0681 0.84 -1.9 679,244 - Dsui_0681 0.84 -1.5 679,244 - Dsui_0681 0.84 +0.5 679,280 - Dsui_0681 0.89 +0.5 679,331 + +0.0 679,339 - -3.0
Or see this region's nucleotide sequence