Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0676 and Dsui_0677 overlap by 4 nucleotides Dsui_0677 and Dsui_0678 are separated by 129 nucleotides Dsui_0678 and Dsui_0679 are separated by 2 nucleotides Dsui_0679 and Dsui_0680 are separated by 3 nucleotides
Dsui_0676: Dsui_0676 - short-chain dehydrogenase of unknown substrate specificity, at 675,044 to 675,817
_0676
Dsui_0677: Dsui_0677 - hypothetical protein, at 675,814 to 676,635
_0677
Dsui_0678: Dsui_0678 - hypothetical protein, at 676,765 to 677,121
_0678
Dsui_0679: Dsui_0679 - uncharacterized protein SCO1/SenC/PrrC, at 677,124 to 677,798
_0679
Dsui_0680: Dsui_0680 - short-chain dehydrogenase of unknown substrate specificity, at 677,802 to 678,533
_0680
Position (kb)
676
677
678 Strain fitness (log2 ratio)
-2
-1
0
1 at 675.780 kb on + strand at 675.784 kb on + strand at 675.788 kb on - strand at 676.016 kb on + strand, within Dsui_0677 at 676.258 kb on + strand at 676.280 kb on + strand, within Dsui_0677 at 676.280 kb on - strand, within Dsui_0677 at 676.302 kb on - strand, within Dsui_0677 at 676.620 kb on + strand at 676.645 kb on - strand at 676.715 kb on + strand at 676.723 kb on - strand at 676.723 kb on - strand at 676.772 kb on + strand at 676.772 kb on + strand at 676.772 kb on + strand at 676.780 kb on - strand at 676.780 kb on - strand at 676.780 kb on - strand at 676.861 kb on - strand, within Dsui_0678 at 676.875 kb on - strand, within Dsui_0678 at 676.891 kb on + strand, within Dsui_0678 at 676.899 kb on - strand, within Dsui_0678 at 676.934 kb on - strand, within Dsui_0678 at 677.042 kb on + strand, within Dsui_0678 at 677.291 kb on + strand, within Dsui_0679 at 677.377 kb on + strand, within Dsui_0679 at 677.404 kb on + strand, within Dsui_0679 at 677.412 kb on - strand, within Dsui_0679 at 677.468 kb on + strand, within Dsui_0679 at 677.492 kb on - strand, within Dsui_0679 at 677.529 kb on - strand, within Dsui_0679 at 677.610 kb on + strand, within Dsui_0679 at 677.623 kb on - strand, within Dsui_0679 at 677.839 kb on + strand at 677.877 kb on - strand, within Dsui_0680 at 677.894 kb on + strand, within Dsui_0680 at 677.927 kb on + strand, within Dsui_0680 at 677.930 kb on - strand, within Dsui_0680 at 678.075 kb on - strand, within Dsui_0680
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 675,780 + +0.4 675,784 + +0.4 675,788 - +0.3 676,016 + Dsui_0677 0.25 -1.9 676,258 + -0.6 676,280 + Dsui_0677 0.57 -0.6 676,280 - Dsui_0677 0.57 -0.4 676,302 - Dsui_0677 0.59 -1.5 676,620 + -1.5 676,645 - -0.3 676,715 + +0.5 676,723 - -1.1 676,723 - -1.1 676,772 + -0.2 676,772 + -1.4 676,772 + -1.5 676,780 - -1.1 676,780 - -1.1 676,780 - +0.5 676,861 - Dsui_0678 0.27 -0.5 676,875 - Dsui_0678 0.31 -1.9 676,891 + Dsui_0678 0.35 -0.2 676,899 - Dsui_0678 0.38 -2.1 676,934 - Dsui_0678 0.47 -0.5 677,042 + Dsui_0678 0.78 -0.8 677,291 + Dsui_0679 0.25 +0.7 677,377 + Dsui_0679 0.37 -1.4 677,404 + Dsui_0679 0.41 -1.0 677,412 - Dsui_0679 0.43 -1.0 677,468 + Dsui_0679 0.51 -1.1 677,492 - Dsui_0679 0.55 -1.5 677,529 - Dsui_0679 0.60 -0.1 677,610 + Dsui_0679 0.72 -1.2 677,623 - Dsui_0679 0.74 -1.1 677,839 + +0.5 677,877 - Dsui_0680 0.10 +0.1 677,894 + Dsui_0680 0.13 +0.1 677,927 + Dsui_0680 0.17 -2.1 677,930 - Dsui_0680 0.17 +1.0 678,075 - Dsui_0680 0.37 +0.2
Or see this region's nucleotide sequence