Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0617 and Dsui_0618 are separated by 10 nucleotides Dsui_0618 and Dsui_0619 are separated by 52 nucleotides
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274
_0618
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.047 kb on - strand, within Dsui_0617 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand at 612.746 kb on + strand at 612.810 kb on - strand, within Dsui_0618 at 612.904 kb on - strand, within Dsui_0618 at 612.916 kb on + strand, within Dsui_0618 at 612.954 kb on - strand, within Dsui_0618 at 613.094 kb on + strand, within Dsui_0618 at 613.161 kb on + strand, within Dsui_0618 at 613.259 kb on + strand at 613.259 kb on + strand at 613.259 kb on + strand at 613.277 kb on - strand at 613.290 kb on - strand at 613.401 kb on + strand at 613.401 kb on + strand at 613.569 kb on + strand at 613.569 kb on + strand, within Dsui_0619 at 613.575 kb on + strand, within Dsui_0619 at 613.577 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.730 kb on - strand at 613.730 kb on - strand, within Dsui_0619 at 613.768 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.857 kb on + strand at 613.867 kb on + strand, within Dsui_0619 at 613.916 kb on + strand, within Dsui_0619 at 613.941 kb on + strand at 613.969 kb on - strand at 614.051 kb on + strand, within Dsui_0619
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 612,047 - Dsui_0617 0.35 +0.5 612,422 - Dsui_0617 0.73 -1.9 612,578 - -0.5 612,603 + +0.5 612,675 + -2.9 612,746 + -0.4 612,810 - Dsui_0618 0.18 -1.9 612,904 - Dsui_0618 0.35 -1.1 612,916 + Dsui_0618 0.37 -1.5 612,954 - Dsui_0618 0.43 -0.5 613,094 + Dsui_0618 0.68 +0.5 613,161 + Dsui_0618 0.80 -3.4 613,259 + -1.5 613,259 + -1.9 613,259 + +0.5 613,277 - +0.5 613,290 - +0.5 613,401 + -1.1 613,401 + +0.0 613,569 + -0.5 613,569 + Dsui_0619 0.10 -1.9 613,575 + Dsui_0619 0.10 +0.5 613,577 - Dsui_0619 0.11 -0.5 613,631 - Dsui_0619 0.13 +0.5 613,631 - Dsui_0619 0.13 +0.5 613,631 - Dsui_0619 0.13 -1.1 613,730 - +0.5 613,730 - Dsui_0619 0.17 -1.1 613,768 - Dsui_0619 0.19 -1.1 613,825 - Dsui_0619 0.21 -1.1 613,825 - Dsui_0619 0.21 -2.6 613,857 + +0.4 613,867 + Dsui_0619 0.23 +0.4 613,916 + Dsui_0619 0.25 -1.9 613,941 + -0.6 613,969 - +0.4 614,051 + Dsui_0619 0.31 -0.6
Or see this region's nucleotide sequence