Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0550 and Dsui_0551 overlap by 8 nucleotides Dsui_0551 and Dsui_0552 are separated by 22 nucleotides Dsui_0552 and Dsui_0553 overlap by 8 nucleotides
Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752
_0550
Dsui_0551: Dsui_0551 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, at 554,745 to 556,130
_0551
Dsui_0552: Dsui_0552 - nitrogen fixation protein NifX, at 556,153 to 556,581
_0552
Dsui_0553: Dsui_0553 - putative nitrogen fixation protein, at 556,574 to 557,044
_0553
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -2
-1
0
1 at 553.804 kb on - strand, within Dsui_0550 at 553.810 kb on + strand, within Dsui_0550 at 553.861 kb on + strand, within Dsui_0550 at 553.878 kb on + strand, within Dsui_0550 at 553.886 kb on - strand, within Dsui_0550 at 554.048 kb on - strand at 554.159 kb on - strand, within Dsui_0550 at 554.205 kb on - strand at 554.305 kb on + strand, within Dsui_0550 at 554.445 kb on + strand, within Dsui_0550 at 554.527 kb on + strand, within Dsui_0550 at 554.626 kb on + strand at 554.634 kb on - strand at 554.672 kb on - strand at 554.679 kb on + strand at 554.687 kb on - strand at 554.749 kb on - strand at 554.817 kb on + strand at 554.870 kb on + strand at 554.889 kb on - strand, within Dsui_0551 at 554.980 kb on + strand, within Dsui_0551 at 555.068 kb on - strand, within Dsui_0551 at 555.085 kb on - strand, within Dsui_0551 at 555.150 kb on - strand, within Dsui_0551 at 555.155 kb on - strand, within Dsui_0551 at 555.176 kb on - strand, within Dsui_0551 at 555.185 kb on - strand at 555.248 kb on + strand, within Dsui_0551 at 555.358 kb on - strand, within Dsui_0551 at 555.484 kb on + strand at 555.507 kb on + strand at 555.533 kb on + strand, within Dsui_0551 at 555.578 kb on - strand, within Dsui_0551 at 555.640 kb on - strand, within Dsui_0551 at 555.769 kb on - strand at 555.790 kb on - strand, within Dsui_0551 at 555.974 kb on + strand at 556.039 kb on - strand at 556.152 kb on - strand at 556.193 kb on + strand at 556.209 kb on - strand, within Dsui_0552 at 556.259 kb on + strand, within Dsui_0552 at 556.272 kb on - strand, within Dsui_0552 at 556.351 kb on - strand, within Dsui_0552 at 556.355 kb on + strand, within Dsui_0552 at 556.478 kb on - strand at 556.485 kb on - strand at 556.534 kb on - strand, within Dsui_0552 at 556.597 kb on - strand at 556.717 kb on + strand, within Dsui_0553 at 556.784 kb on + strand, within Dsui_0553 at 556.839 kb on - strand, within Dsui_0553 at 556.876 kb on - strand, within Dsui_0553 at 556.931 kb on + strand at 557.008 kb on - strand at 557.055 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 553,804 - Dsui_0550 0.35 -1.1 553,810 + Dsui_0550 0.35 -0.6 553,861 + Dsui_0550 0.39 +0.4 553,878 + Dsui_0550 0.40 -1.6 553,886 - Dsui_0550 0.41 -1.1 554,048 - +0.4 554,159 - Dsui_0550 0.59 -1.1 554,205 - +0.4 554,305 + Dsui_0550 0.69 -0.6 554,445 + Dsui_0550 0.79 +0.4 554,527 + Dsui_0550 0.84 +0.4 554,626 + -1.1 554,634 - -0.6 554,672 - -0.6 554,679 + -0.6 554,687 - -0.6 554,749 - +0.4 554,817 + -1.6 554,870 + -1.1 554,889 - Dsui_0551 0.10 -1.1 554,980 + Dsui_0551 0.17 +0.4 555,068 - Dsui_0551 0.23 -0.6 555,085 - Dsui_0551 0.25 -0.6 555,150 - Dsui_0551 0.29 -0.6 555,155 - Dsui_0551 0.30 +0.4 555,176 - Dsui_0551 0.31 +0.4 555,185 - +0.4 555,248 + Dsui_0551 0.36 -2.7 555,358 - Dsui_0551 0.44 +0.4 555,484 + +0.4 555,507 + +0.4 555,533 + Dsui_0551 0.57 -0.6 555,578 - Dsui_0551 0.60 +0.4 555,640 - Dsui_0551 0.65 +0.4 555,769 - +0.4 555,790 - Dsui_0551 0.75 -0.6 555,974 + +0.4 556,039 - +0.4 556,152 - -2.7 556,193 + +0.4 556,209 - Dsui_0552 0.13 -0.6 556,259 + Dsui_0552 0.25 -1.1 556,272 - Dsui_0552 0.28 +0.4 556,351 - Dsui_0552 0.46 +0.4 556,355 + Dsui_0552 0.47 +0.4 556,478 - +0.4 556,485 - +0.4 556,534 - Dsui_0552 0.89 -2.4 556,597 - -2.4 556,717 + Dsui_0553 0.30 -1.1 556,784 + Dsui_0553 0.45 -1.1 556,839 - Dsui_0553 0.56 -1.1 556,876 - Dsui_0553 0.64 -1.6 556,931 + +0.4 557,008 - +0.4 557,055 - +0.4 557,056 - -0.6 557,056 - +0.4 557,056 - +0.4 557,073 + -1.2
Or see this region's nucleotide sequence