Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0539 and Dsui_0540 overlap by 4 nucleotides Dsui_0540 and Dsui_0541 overlap by 8 nucleotides Dsui_0541 and Dsui_0542 are separated by 117 nucleotides
Dsui_0539: Dsui_0539 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 543,245 to 544,129
_0539
Dsui_0540: Dsui_0540 - L-threonine-O-3-phosphate decarboxylase, at 544,126 to 545,130
_0540
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705
_0542
Position (kb) 545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 544.214 kb on - strand at 544.329 kb on + strand, within Dsui_0540 at 544.337 kb on - strand, within Dsui_0540 at 544.352 kb on + strand at 544.484 kb on + strand, within Dsui_0540 at 544.526 kb on + strand, within Dsui_0540 at 544.556 kb on - strand, within Dsui_0540 at 544.672 kb on - strand, within Dsui_0540 at 544.937 kb on - strand, within Dsui_0540 at 544.965 kb on + strand, within Dsui_0540 at 544.965 kb on + strand at 544.973 kb on - strand, within Dsui_0540 at 545.035 kb on - strand at 545.537 kb on - strand, within Dsui_0541 at 545.556 kb on + strand, within Dsui_0541 at 545.564 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.650 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.697 kb on - strand, within Dsui_0541 at 545.733 kb on + strand at 545.738 kb on + strand, within Dsui_0541 at 545.799 kb on - strand, within Dsui_0541 at 545.861 kb on + strand at 545.886 kb on - strand, within Dsui_0541 at 545.922 kb on - strand, within Dsui_0541 at 546.037 kb on - strand at 546.076 kb on + strand at 546.079 kb on - strand at 546.084 kb on - strand at 546.084 kb on - strand at 546.175 kb on + strand at 546.225 kb on + strand at 546.225 kb on + strand at 546.233 kb on + strand at 546.233 kb on + strand at 546.238 kb on + strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.385 kb on + strand at 546.393 kb on - strand, within Dsui_0542 at 546.747 kb on + strand, within Dsui_0542 at 546.755 kb on - strand, within Dsui_0542 at 546.757 kb on + strand, within Dsui_0542 at 546.783 kb on + strand, within Dsui_0542 at 546.846 kb on + strand, within Dsui_0542 at 546.900 kb on + strand, within Dsui_0542 at 546.900 kb on + strand, within Dsui_0542 at 546.950 kb on + strand, within Dsui_0542 at 546.970 kb on + strand, within Dsui_0542 at 547.002 kb on + strand at 547.049 kb on + strand, within Dsui_0542
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 544,214 - +0.8 544,329 + Dsui_0540 0.20 +0.4 544,337 - Dsui_0540 0.21 -0.9 544,352 + +0.4 544,484 + Dsui_0540 0.36 -1.1 544,526 + Dsui_0540 0.40 -0.6 544,556 - Dsui_0540 0.43 +1.0 544,672 - Dsui_0540 0.54 +1.2 544,937 - Dsui_0540 0.81 +0.6 544,965 + Dsui_0540 0.83 +0.4 544,965 + +0.4 544,973 - Dsui_0540 0.84 +0.8 545,035 - +0.5 545,537 - Dsui_0541 0.43 +0.2 545,556 + Dsui_0541 0.45 -1.9 545,564 - Dsui_0541 0.45 -0.0 545,612 - Dsui_0541 0.50 +0.3 545,612 - Dsui_0541 0.50 -0.1 545,650 - Dsui_0541 0.54 -1.9 545,671 - Dsui_0541 0.56 +0.5 545,671 - Dsui_0541 0.56 +0.2 545,671 - Dsui_0541 0.56 -1.0 545,682 - Dsui_0541 0.58 +0.4 545,682 - Dsui_0541 0.58 -0.3 545,697 - Dsui_0541 0.59 +0.9 545,733 + -0.6 545,738 + Dsui_0541 0.63 -2.4 545,799 - Dsui_0541 0.70 +0.5 545,861 + -0.6 545,886 - Dsui_0541 0.78 +0.8 545,922 - Dsui_0541 0.82 +0.6 546,037 - +0.1 546,076 + +0.4 546,079 - +0.0 546,084 - +0.5 546,084 - +0.8 546,175 + +0.4 546,225 + +0.4 546,225 + +1.8 546,233 + -0.6 546,233 + -1.0 546,238 + -1.1 546,241 - +0.4 546,241 - +0.4 546,241 - +0.4 546,241 - +0.4 546,241 - +0.4 546,385 + +0.4 546,393 - Dsui_0542 0.12 -0.6 546,747 + Dsui_0542 0.36 +0.2 546,755 - Dsui_0542 0.36 -0.6 546,757 + Dsui_0542 0.36 -1.1 546,783 + Dsui_0542 0.38 +0.2 546,846 + Dsui_0542 0.42 -1.1 546,900 + Dsui_0542 0.46 -0.6 546,900 + Dsui_0542 0.46 -1.2 546,950 + Dsui_0542 0.49 +1.2 546,970 + Dsui_0542 0.51 +0.9 547,002 + -1.1 547,049 + Dsui_0542 0.56 -1.6
Or see this region's nucleotide sequence