Strain Fitness in Dechlorosoma suillum PS around Dsui_0518

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0517 and Dsui_0518 are separated by 47 nucleotidesDsui_0518 and Dsui_0519 are separated by 9 nucleotides Dsui_0517: Dsui_0517 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 522,450 to 523,982 _0517 Dsui_0518: Dsui_0518 - methylmalonyl-CoA-mutase-associated GTPase MeaB (from data), at 524,030 to 525,058 _0518 Dsui_0519: Dsui_0519 - Methylmalonyl-CoA mutase (EC 5.4.99.2) (from data), at 525,068 to 527,233 _0519 Position (kb) 524 525 526Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 523.065 kb on - strand, within Dsui_0517at 523.075 kb on - strand, within Dsui_0517at 523.283 kb on - strand, within Dsui_0517at 523.622 kb on - strand, within Dsui_0517at 523.644 kb on + strand, within Dsui_0517at 523.742 kb on - strand, within Dsui_0517at 523.752 kb on + strand, within Dsui_0517at 523.812 kb on - strandat 523.824 kb on - strand, within Dsui_0517at 523.975 kb on + strandat 523.988 kb on - strandat 524.057 kb on - strandat 524.077 kb on - strandat 524.121 kb on + strandat 524.157 kb on + strand, within Dsui_0518at 524.311 kb on - strand, within Dsui_0518at 524.339 kb on + strand, within Dsui_0518at 524.347 kb on - strand, within Dsui_0518at 524.516 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.642 kb on - strand, within Dsui_0518at 524.697 kb on + strand, within Dsui_0518at 524.781 kb on - strand, within Dsui_0518at 524.946 kb on + strand, within Dsui_0518at 525.009 kb on + strandat 525.023 kb on + strandat 525.034 kb on + strandat 525.059 kb on + strandat 525.059 kb on + strandat 525.059 kb on + strandat 525.065 kb on + strandat 525.067 kb on - strandat 525.072 kb on - strandat 525.179 kb on - strandat 525.299 kb on + strand, within Dsui_0519at 525.300 kb on - strand, within Dsui_0519at 525.449 kb on + strand, within Dsui_0519at 525.467 kb on + strand, within Dsui_0519at 525.499 kb on - strand, within Dsui_0519at 525.647 kb on - strand, within Dsui_0519at 525.647 kb on - strand, within Dsui_0519at 525.706 kb on - strand, within Dsui_0519at 525.813 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.823 kb on + strand, within Dsui_0519at 525.840 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.938 kb on - strand, within Dsui_0519at 525.943 kb on - strand, within Dsui_0519at 526.026 kb on + strand, within Dsui_0519at 526.034 kb on - strand, within Dsui_0519at 526.039 kb on - strand, within Dsui_0519at 526.041 kb on - strand, within Dsui_0519

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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523,065 - Dsui_0517 0.40 +1.4
523,075 - Dsui_0517 0.41 +1.1
523,283 - Dsui_0517 0.54 +0.2
523,622 - Dsui_0517 0.76 +0.4
523,644 + Dsui_0517 0.78 +0.4
523,742 - Dsui_0517 0.84 -0.0
523,752 + Dsui_0517 0.85 +0.4
523,812 - +1.4
523,824 - Dsui_0517 0.90 -0.2
523,975 + +0.3
523,988 - +0.5
524,057 - -0.1
524,077 - -0.1
524,121 + +0.4
524,157 + Dsui_0518 0.12 -0.6
524,311 - Dsui_0518 0.27 -3.8
524,339 + Dsui_0518 0.30 -2.2
524,347 - Dsui_0518 0.31 -0.4
524,516 - Dsui_0518 0.47 +0.4
524,549 - Dsui_0518 0.50 -0.4
524,549 - Dsui_0518 0.50 -1.2
524,642 - Dsui_0518 0.59 +0.1
524,697 + Dsui_0518 0.65 -2.2
524,781 - Dsui_0518 0.73 +0.6
524,946 + Dsui_0518 0.89 -1.6
525,009 + -2.6
525,023 + +0.4
525,034 + +0.4
525,059 + -1.2
525,059 + +0.4
525,059 + -1.2
525,065 + +0.4
525,067 - -0.1
525,072 - -0.3
525,179 - +0.3
525,299 + Dsui_0519 0.11 -0.6
525,300 - Dsui_0519 0.11 +0.1
525,449 + Dsui_0519 0.18 -1.2
525,467 + Dsui_0519 0.18 -1.6
525,499 - Dsui_0519 0.20 +0.2
525,647 - Dsui_0519 0.27 +0.9
525,647 - Dsui_0519 0.27 -0.0
525,706 - Dsui_0519 0.29 +1.6
525,813 + Dsui_0519 0.34 +0.4
525,823 + Dsui_0519 0.35 -0.6
525,823 + Dsui_0519 0.35 -2.4
525,823 + Dsui_0519 0.35 -1.2
525,840 - Dsui_0519 0.36 -0.1
525,938 - Dsui_0519 0.40 -0.1
525,938 - Dsui_0519 0.40 +0.4
525,938 - Dsui_0519 0.40 +0.3
525,943 - Dsui_0519 0.40 +0.2
526,026 + Dsui_0519 0.44 +0.4
526,034 - Dsui_0519 0.45 +0.9
526,039 - Dsui_0519 0.45 +0.3
526,041 - Dsui_0519 0.45 -0.3

Or see this region's nucleotide sequence