Strain Fitness in Dechlorosoma suillum PS around Dsui_0517

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0516 and Dsui_0517 are separated by 20 nucleotidesDsui_0517 and Dsui_0518 are separated by 47 nucleotides Dsui_0516: Dsui_0516 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) (from data), at 520,438 to 522,429 _0516 Dsui_0517: Dsui_0517 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 522,450 to 523,982 _0517 Dsui_0518: Dsui_0518 - methylmalonyl-CoA-mutase-associated GTPase MeaB (from data), at 524,030 to 525,058 _0518 Position (kb) 522 523 524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 521.463 kb on - strand, within Dsui_0516at 521.513 kb on - strand, within Dsui_0516at 521.547 kb on + strand, within Dsui_0516at 521.649 kb on - strand, within Dsui_0516at 521.649 kb on - strand, within Dsui_0516at 521.725 kb on - strand, within Dsui_0516at 521.858 kb on - strand, within Dsui_0516at 521.870 kb on + strand, within Dsui_0516at 522.041 kb on + strand, within Dsui_0516at 522.041 kb on + strand, within Dsui_0516at 522.059 kb on + strand, within Dsui_0516at 522.185 kb on + strand, within Dsui_0516at 522.235 kb on - strandat 522.258 kb on + strandat 522.403 kb on + strandat 522.470 kb on - strandat 522.515 kb on + strandat 522.620 kb on - strand, within Dsui_0517at 522.682 kb on + strand, within Dsui_0517at 522.766 kb on - strand, within Dsui_0517at 522.783 kb on - strand, within Dsui_0517at 522.829 kb on + strand, within Dsui_0517at 522.839 kb on + strand, within Dsui_0517at 523.065 kb on - strand, within Dsui_0517at 523.075 kb on - strand, within Dsui_0517at 523.283 kb on - strand, within Dsui_0517at 523.622 kb on - strand, within Dsui_0517at 523.644 kb on + strand, within Dsui_0517at 523.742 kb on - strand, within Dsui_0517at 523.752 kb on + strand, within Dsui_0517at 523.812 kb on - strandat 523.824 kb on - strand, within Dsui_0517at 523.975 kb on + strandat 523.988 kb on - strandat 524.057 kb on - strandat 524.077 kb on - strandat 524.121 kb on + strandat 524.157 kb on + strand, within Dsui_0518at 524.311 kb on - strand, within Dsui_0518at 524.339 kb on + strand, within Dsui_0518at 524.347 kb on - strand, within Dsui_0518at 524.516 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.549 kb on - strand, within Dsui_0518at 524.642 kb on - strand, within Dsui_0518at 524.697 kb on + strand, within Dsui_0518at 524.781 kb on - strand, within Dsui_0518at 524.946 kb on + strand, within Dsui_0518

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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521,463 - Dsui_0516 0.51 -0.3
521,513 - Dsui_0516 0.54 +2.1
521,547 + Dsui_0516 0.56 +0.4
521,649 - Dsui_0516 0.61 +0.6
521,649 - Dsui_0516 0.61 +1.3
521,725 - Dsui_0516 0.65 +0.3
521,858 - Dsui_0516 0.71 +0.9
521,870 + Dsui_0516 0.72 -1.6
522,041 + Dsui_0516 0.80 -1.2
522,041 + Dsui_0516 0.80 -2.2
522,059 + Dsui_0516 0.81 -1.6
522,185 + Dsui_0516 0.88 +0.4
522,235 - +1.6
522,258 + -1.6
522,403 + -0.6
522,470 - +0.3
522,515 + +0.4
522,620 - Dsui_0517 0.11 +0.2
522,682 + Dsui_0517 0.15 -2.2
522,766 - Dsui_0517 0.21 +0.7
522,783 - Dsui_0517 0.22 +0.8
522,829 + Dsui_0517 0.25 +0.4
522,839 + Dsui_0517 0.25 +0.4
523,065 - Dsui_0517 0.40 +1.4
523,075 - Dsui_0517 0.41 +1.1
523,283 - Dsui_0517 0.54 +0.2
523,622 - Dsui_0517 0.76 +0.4
523,644 + Dsui_0517 0.78 +0.4
523,742 - Dsui_0517 0.84 -0.0
523,752 + Dsui_0517 0.85 +0.4
523,812 - +1.4
523,824 - Dsui_0517 0.90 -0.2
523,975 + +0.3
523,988 - +0.5
524,057 - -0.1
524,077 - -0.1
524,121 + +0.4
524,157 + Dsui_0518 0.12 -0.6
524,311 - Dsui_0518 0.27 -3.8
524,339 + Dsui_0518 0.30 -2.2
524,347 - Dsui_0518 0.31 -0.4
524,516 - Dsui_0518 0.47 +0.4
524,549 - Dsui_0518 0.50 -0.4
524,549 - Dsui_0518 0.50 -1.2
524,642 - Dsui_0518 0.59 +0.1
524,697 + Dsui_0518 0.65 -2.2
524,781 - Dsui_0518 0.73 +0.6
524,946 + Dsui_0518 0.89 -1.6

Or see this region's nucleotide sequence