Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0462 and Dsui_0463 are separated by 47 nucleotides Dsui_0463 and Dsui_0464 are separated by 6 nucleotides Dsui_0464 and Dsui_0465 overlap by 14 nucleotides
Dsui_0462: Dsui_0462 - ADP-heptose:LPS heptosyltransferase, at 467,916 to 468,938
_0462
Dsui_0463: Dsui_0463 - hypothetical protein, at 468,986 to 470,323
_0463
Dsui_0464: Dsui_0464 - hypothetical protein, at 470,330 to 471,286
_0464
Dsui_0465: Dsui_0465 - ADP-heptose:LPS heptosyltransferase, at 471,273 to 472,451
_0465
Position (kb) 468
469
470
471 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 468.018 kb on - strand at 468.026 kb on - strand, within Dsui_0462 at 468.134 kb on - strand, within Dsui_0462 at 468.214 kb on - strand, within Dsui_0462 at 468.257 kb on - strand, within Dsui_0462 at 468.347 kb on - strand, within Dsui_0462 at 468.362 kb on - strand, within Dsui_0462 at 468.363 kb on - strand, within Dsui_0462 at 468.445 kb on + strand, within Dsui_0462 at 468.457 kb on - strand, within Dsui_0462 at 468.527 kb on + strand, within Dsui_0462 at 468.576 kb on + strand, within Dsui_0462 at 468.665 kb on - strand, within Dsui_0462 at 468.709 kb on - strand, within Dsui_0462 at 468.719 kb on + strand, within Dsui_0462 at 468.732 kb on + strand, within Dsui_0462 at 468.949 kb on + strand at 469.009 kb on - strand at 469.071 kb on - strand at 469.080 kb on + strand at 469.088 kb on - strand at 469.088 kb on - strand at 469.207 kb on + strand, within Dsui_0463 at 469.312 kb on - strand, within Dsui_0463 at 469.323 kb on - strand, within Dsui_0463 at 469.333 kb on - strand, within Dsui_0463 at 469.386 kb on - strand at 469.501 kb on - strand, within Dsui_0463 at 469.513 kb on + strand, within Dsui_0463 at 469.555 kb on + strand, within Dsui_0463 at 469.579 kb on - strand, within Dsui_0463 at 469.588 kb on + strand, within Dsui_0463 at 469.722 kb on - strand, within Dsui_0463 at 469.761 kb on + strand, within Dsui_0463 at 469.785 kb on - strand at 469.818 kb on + strand, within Dsui_0463 at 469.858 kb on + strand, within Dsui_0463 at 469.910 kb on - strand, within Dsui_0463 at 469.920 kb on - strand, within Dsui_0463 at 469.940 kb on - strand, within Dsui_0463 at 470.006 kb on - strand, within Dsui_0463 at 470.043 kb on - strand at 470.086 kb on - strand, within Dsui_0463 at 470.097 kb on + strand, within Dsui_0463 at 470.216 kb on + strand at 470.275 kb on - strand at 470.366 kb on + strand at 470.446 kb on - strand, within Dsui_0464 at 470.679 kb on + strand, within Dsui_0464 at 470.707 kb on - strand, within Dsui_0464 at 470.757 kb on + strand at 470.758 kb on - strand, within Dsui_0464 at 470.818 kb on - strand, within Dsui_0464 at 470.893 kb on + strand, within Dsui_0464 at 470.918 kb on + strand, within Dsui_0464 at 470.973 kb on - strand, within Dsui_0464 at 471.108 kb on - strand, within Dsui_0464 at 471.157 kb on + strand at 471.168 kb on - strand, within Dsui_0464 at 471.236 kb on - strand at 471.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 468,018 - +0.4 468,026 - Dsui_0462 0.11 -1.1 468,134 - Dsui_0462 0.21 -0.6 468,214 - Dsui_0462 0.29 -1.1 468,257 - Dsui_0462 0.33 -1.6 468,347 - Dsui_0462 0.42 -0.6 468,362 - Dsui_0462 0.44 +0.4 468,363 - Dsui_0462 0.44 +0.4 468,445 + Dsui_0462 0.52 +2.7 468,457 - Dsui_0462 0.53 +1.1 468,527 + Dsui_0462 0.60 +2.9 468,576 + Dsui_0462 0.65 +2.8 468,665 - Dsui_0462 0.73 -1.1 468,709 - Dsui_0462 0.78 -1.9 468,719 + Dsui_0462 0.78 +3.1 468,732 + Dsui_0462 0.80 +3.0 468,949 + +1.1 469,009 - +0.4 469,071 - -1.1 469,080 + -4.8 469,088 - +0.4 469,088 - +0.4 469,207 + Dsui_0463 0.17 -3.6 469,312 - Dsui_0463 0.24 -0.3 469,323 - Dsui_0463 0.25 +0.4 469,333 - Dsui_0463 0.26 -0.6 469,386 - -0.6 469,501 - Dsui_0463 0.38 -1.1 469,513 + Dsui_0463 0.39 -4.3 469,555 + Dsui_0463 0.43 -3.4 469,579 - Dsui_0463 0.44 +0.4 469,588 + Dsui_0463 0.45 -4.7 469,722 - Dsui_0463 0.55 -2.4 469,761 + Dsui_0463 0.58 -2.8 469,785 - +0.4 469,818 + Dsui_0463 0.62 -4.6 469,858 + Dsui_0463 0.65 -1.6 469,910 - Dsui_0463 0.69 -1.9 469,920 - Dsui_0463 0.70 -2.6 469,940 - Dsui_0463 0.71 +0.4 470,006 - Dsui_0463 0.76 -2.4 470,043 - +0.4 470,086 - Dsui_0463 0.82 -1.1 470,097 + Dsui_0463 0.83 -4.3 470,216 + -4.5 470,275 - -1.6 470,366 + -0.7 470,446 - Dsui_0464 0.12 -0.3 470,679 + Dsui_0464 0.36 -3.0 470,707 - Dsui_0464 0.39 +0.2 470,757 + +2.0 470,758 - Dsui_0464 0.45 +0.3 470,818 - Dsui_0464 0.51 +0.1 470,893 + Dsui_0464 0.59 -0.6 470,918 + Dsui_0464 0.61 -0.6 470,973 - Dsui_0464 0.67 +1.9 471,108 - Dsui_0464 0.81 +0.6 471,157 + +0.4 471,168 - Dsui_0464 0.88 -0.7 471,236 - +0.1 471,271 + +0.4
Or see this region's nucleotide sequence