Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0437 and Dsui_0438 are separated by 51 nucleotides Dsui_0438 and Dsui_0439 are separated by 45 nucleotides Dsui_0439 and Dsui_0440 are separated by 76 nucleotides
Dsui_0437: Dsui_0437 - succinate-semialdehyde dehydrogenase, at 444,009 to 445,460
_0437
Dsui_0438: Dsui_0438 - cell wall-associated hydrolase, invasion-associated protein, at 445,512 to 446,003
_0438
Dsui_0439: Dsui_0439 - 2-nitropropane dioxygenase-like enzyme, at 446,049 to 446,996
_0439
Dsui_0440: Dsui_0440 - HDOD domain-containing protein, at 447,073 to 447,930
_0440
Position (kb) 446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 445.084 kb on + strand at 445.092 kb on - strand, within Dsui_0437 at 445.127 kb on + strand at 445.140 kb on - strand, within Dsui_0437 at 445.173 kb on - strand, within Dsui_0437 at 445.191 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.247 kb on - strand, within Dsui_0437 at 445.272 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.439 kb on + strand at 445.602 kb on - strand, within Dsui_0438 at 445.715 kb on - strand, within Dsui_0438 at 445.727 kb on + strand, within Dsui_0438 at 445.833 kb on + strand, within Dsui_0438 at 445.973 kb on + strand at 445.973 kb on + strand at 445.973 kb on + strand at 445.988 kb on + strand at 446.080 kb on - strand at 446.130 kb on - strand at 446.150 kb on + strand, within Dsui_0439 at 446.201 kb on + strand, within Dsui_0439 at 446.247 kb on + strand, within Dsui_0439 at 446.278 kb on - strand at 446.331 kb on - strand, within Dsui_0439 at 446.362 kb on - strand at 446.372 kb on + strand, within Dsui_0439 at 446.380 kb on - strand, within Dsui_0439 at 446.462 kb on - strand, within Dsui_0439 at 446.679 kb on + strand, within Dsui_0439 at 446.699 kb on - strand, within Dsui_0439 at 446.704 kb on - strand, within Dsui_0439 at 446.972 kb on + strand at 446.972 kb on + strand at 446.998 kb on - strand at 447.027 kb on + strand at 447.027 kb on + strand at 447.035 kb on - strand at 447.134 kb on + strand at 447.142 kb on - strand at 447.142 kb on - strand at 447.151 kb on + strand at 447.156 kb on + strand at 447.225 kb on - strand, within Dsui_0440 at 447.290 kb on - strand, within Dsui_0440 at 447.296 kb on + strand, within Dsui_0440 at 447.304 kb on - strand at 447.309 kb on - strand, within Dsui_0440 at 447.336 kb on - strand, within Dsui_0440 at 447.339 kb on + strand, within Dsui_0440 at 447.386 kb on + strand, within Dsui_0440 at 447.393 kb on - strand, within Dsui_0440 at 447.442 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.475 kb on + strand, within Dsui_0440 at 447.569 kb on + strand, within Dsui_0440 at 447.788 kb on - strand, within Dsui_0440 at 447.825 kb on + strand, within Dsui_0440 at 447.961 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 445,084 + +0.4 445,092 - Dsui_0437 0.75 +0.7 445,127 + +0.4 445,140 - Dsui_0437 0.78 +0.2 445,173 - Dsui_0437 0.80 -0.5 445,191 - Dsui_0437 0.81 +0.1 445,201 - Dsui_0437 0.82 +0.4 445,201 - Dsui_0437 0.82 +0.1 445,247 - Dsui_0437 0.85 -0.8 445,272 + +0.4 445,317 + -0.6 445,317 + -3.3 445,317 + +0.4 445,439 + -2.1 445,602 - Dsui_0438 0.18 -0.6 445,715 - Dsui_0438 0.41 -1.1 445,727 + Dsui_0438 0.44 -0.0 445,833 + Dsui_0438 0.65 -0.3 445,973 + -0.4 445,973 + -0.3 445,973 + -0.1 445,988 + -1.0 446,080 - -1.1 446,130 - -1.1 446,150 + Dsui_0439 0.11 -0.2 446,201 + Dsui_0439 0.16 -0.6 446,247 + Dsui_0439 0.21 -0.2 446,278 - +0.4 446,331 - Dsui_0439 0.30 -1.1 446,362 - +0.4 446,372 + Dsui_0439 0.34 -0.3 446,380 - Dsui_0439 0.35 -0.3 446,462 - Dsui_0439 0.44 -0.6 446,679 + Dsui_0439 0.66 -0.4 446,699 - Dsui_0439 0.69 +0.4 446,704 - Dsui_0439 0.69 -1.4 446,972 + -0.1 446,972 + -0.3 446,998 - +0.4 447,027 + -0.1 447,027 + -0.3 447,035 - +0.4 447,134 + -0.5 447,142 - -1.9 447,142 - -0.6 447,151 + +0.2 447,156 + -0.2 447,225 - Dsui_0440 0.18 +0.8 447,290 - Dsui_0440 0.25 -1.1 447,296 + Dsui_0440 0.26 +0.6 447,304 - +0.4 447,309 - Dsui_0440 0.28 +0.2 447,336 - Dsui_0440 0.31 -0.6 447,339 + Dsui_0440 0.31 +0.4 447,386 + Dsui_0440 0.36 +0.2 447,393 - Dsui_0440 0.37 -0.2 447,442 + Dsui_0440 0.43 +0.2 447,475 + Dsui_0440 0.47 +0.2 447,475 + Dsui_0440 0.47 +0.0 447,569 + Dsui_0440 0.58 +0.0 447,788 - Dsui_0440 0.83 +0.4 447,825 + Dsui_0440 0.88 +0.4 447,961 + +0.1
Or see this region's nucleotide sequence