Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0433 and Dsui_0434 are separated by 51 nucleotides Dsui_0434 and Dsui_0435 are separated by 64 nucleotides Dsui_0435 and Dsui_0436 are separated by 227 nucleotides
Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606
_0433
Dsui_0434: Dsui_0434 - ribonuclease, Rne/Rng family, at 440,658 to 442,139
_0434
Dsui_0435: Dsui_0435 - Sel1 repeat protein, at 442,204 to 442,791
_0435
Dsui_0436: Dsui_0436 - dienelactone hydrolase-like enzyme, at 443,019 to 443,903
_0436
Position (kb) 440
441
442
443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 439.784 kb on - strand, within Dsui_0433 at 439.814 kb on + strand, within Dsui_0433 at 439.950 kb on - strand at 439.996 kb on - strand, within Dsui_0433 at 440.076 kb on - strand, within Dsui_0433 at 440.134 kb on - strand, within Dsui_0433 at 440.266 kb on - strand, within Dsui_0433 at 440.291 kb on - strand, within Dsui_0433 at 440.384 kb on + strand, within Dsui_0433 at 440.392 kb on - strand, within Dsui_0433 at 440.447 kb on + strand, within Dsui_0433 at 440.455 kb on - strand, within Dsui_0433 at 440.619 kb on + strand at 440.838 kb on + strand, within Dsui_0434 at 440.839 kb on + strand, within Dsui_0434 at 440.881 kb on - strand, within Dsui_0434 at 440.961 kb on + strand, within Dsui_0434 at 441.140 kb on - strand, within Dsui_0434 at 441.408 kb on + strand, within Dsui_0434 at 441.416 kb on - strand at 441.454 kb on - strand at 441.504 kb on + strand, within Dsui_0434 at 441.745 kb on - strand at 441.798 kb on + strand, within Dsui_0434 at 441.882 kb on + strand, within Dsui_0434 at 441.923 kb on - strand, within Dsui_0434 at 442.077 kb on + strand at 442.133 kb on + strand at 442.285 kb on + strand, within Dsui_0435 at 442.346 kb on - strand, within Dsui_0435 at 442.453 kb on - strand, within Dsui_0435 at 442.491 kb on + strand, within Dsui_0435 at 442.572 kb on - strand, within Dsui_0435 at 442.594 kb on + strand, within Dsui_0435 at 442.599 kb on + strand at 442.747 kb on + strand at 442.747 kb on + strand at 442.771 kb on + strand at 442.802 kb on + strand at 442.810 kb on - strand at 442.957 kb on + strand at 443.130 kb on - strand, within Dsui_0436 at 443.135 kb on - strand, within Dsui_0436
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 439,784 - Dsui_0433 0.37 -1.6 439,814 + Dsui_0433 0.40 +0.4 439,950 - +0.4 439,996 - Dsui_0433 0.54 +0.8 440,076 - Dsui_0433 0.60 -0.1 440,134 - Dsui_0433 0.64 +1.0 440,266 - Dsui_0433 0.74 +1.1 440,291 - Dsui_0433 0.76 -1.1 440,384 + Dsui_0433 0.83 -0.5 440,392 - Dsui_0433 0.84 -0.9 440,447 + Dsui_0433 0.88 -2.1 440,455 - Dsui_0433 0.88 -1.1 440,619 + -0.4 440,838 + Dsui_0434 0.12 -1.6 440,839 + Dsui_0434 0.12 -2.3 440,881 - Dsui_0434 0.15 +0.4 440,961 + Dsui_0434 0.20 -1.7 441,140 - Dsui_0434 0.33 -1.6 441,408 + Dsui_0434 0.51 -2.9 441,416 - +0.4 441,454 - -0.6 441,504 + Dsui_0434 0.57 -4.0 441,745 - +0.4 441,798 + Dsui_0434 0.77 -4.5 441,882 + Dsui_0434 0.83 -3.4 441,923 - Dsui_0434 0.85 +0.4 442,077 + -0.2 442,133 + -0.1 442,285 + Dsui_0435 0.14 +0.4 442,346 - Dsui_0435 0.24 -0.6 442,453 - Dsui_0435 0.42 -0.6 442,491 + Dsui_0435 0.49 -1.2 442,572 - Dsui_0435 0.63 -0.6 442,594 + Dsui_0435 0.66 +0.4 442,599 + -1.2 442,747 + -1.6 442,747 + +0.4 442,771 + +0.4 442,802 + +0.4 442,810 - -0.6 442,957 + -0.2 443,130 - Dsui_0436 0.13 +0.4 443,135 - Dsui_0436 0.13 -1.1
Or see this region's nucleotide sequence