Strain Fitness in Dechlorosoma suillum PS around Dsui_0400

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0398 and Dsui_0399 are separated by 2 nucleotidesDsui_0399 and Dsui_0400 are separated by 1 nucleotidesDsui_0400 and Dsui_0401 are separated by 121 nucleotides Dsui_0398: Dsui_0398 - UDP-glucose-4-epimerase, at 395,875 to 396,888 _0398 Dsui_0399: Dsui_0399 - symmetrical bis(5'-nucleosyl)-tetraphosphatase, at 396,891 to 397,721 _0399 Dsui_0400: Dsui_0400 - putative nucleoside-diphosphate sugar epimerase, at 397,723 to 399,585 _0400 Dsui_0401: Dsui_0401 - nucleoside-diphosphate-sugar epimerase, at 399,707 to 400,711 _0401 Position (kb) 397 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 396.740 kb on + strand, within Dsui_0398at 396.740 kb on + strand, within Dsui_0398at 396.748 kb on - strand, within Dsui_0398at 396.804 kb on - strandat 396.864 kb on + strandat 396.872 kb on - strandat 397.007 kb on - strand, within Dsui_0399at 397.141 kb on + strand, within Dsui_0399at 397.266 kb on - strand, within Dsui_0399at 397.406 kb on - strandat 397.504 kb on + strand, within Dsui_0399at 397.538 kb on - strand, within Dsui_0399at 397.600 kb on + strandat 397.659 kb on + strandat 397.756 kb on - strandat 397.819 kb on + strandat 397.841 kb on + strandat 397.841 kb on + strandat 397.841 kb on + strandat 397.841 kb on + strandat 397.995 kb on - strand, within Dsui_0400at 398.062 kb on + strand, within Dsui_0400at 398.253 kb on + strand, within Dsui_0400at 398.257 kb on - strand, within Dsui_0400at 398.335 kb on + strand, within Dsui_0400at 398.358 kb on - strand, within Dsui_0400at 398.415 kb on + strand, within Dsui_0400at 398.452 kb on + strand, within Dsui_0400at 398.455 kb on + strand, within Dsui_0400at 398.522 kb on + strand, within Dsui_0400at 398.548 kb on - strand, within Dsui_0400at 398.662 kb on - strand, within Dsui_0400at 398.725 kb on + strand, within Dsui_0400at 398.946 kb on + strandat 398.959 kb on - strand, within Dsui_0400at 398.985 kb on + strand, within Dsui_0400at 399.218 kb on - strand, within Dsui_0400at 399.325 kb on + strand, within Dsui_0400at 399.333 kb on - strand, within Dsui_0400at 399.501 kb on + strandat 399.570 kb on + strandat 399.603 kb on - strandat 399.631 kb on + strandat 399.639 kb on - strandat 399.639 kb on - strandat 399.660 kb on + strandat 399.686 kb on - strandat 400.103 kb on + strandat 400.220 kb on - strand, within Dsui_0401at 400.346 kb on - strand, within Dsui_0401at 400.492 kb on - strand, within Dsui_0401

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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396,740 + Dsui_0398 0.85 -0.5
396,740 + Dsui_0398 0.85 +0.5
396,748 - Dsui_0398 0.86 -3.6
396,804 - -2.9
396,864 + +0.5
396,872 - -2.9
397,007 - Dsui_0399 0.14 +4.9
397,141 + Dsui_0399 0.30 -0.5
397,266 - Dsui_0399 0.45 +4.6
397,406 - +3.2
397,504 + Dsui_0399 0.74 -2.8
397,538 - Dsui_0399 0.78 +4.5
397,600 + +0.5
397,659 + -1.8
397,756 - -2.7
397,819 + +0.5
397,841 + -0.5
397,841 + -3.0
397,841 + -0.5
397,841 + -0.5
397,995 - Dsui_0400 0.15 -2.5
398,062 + Dsui_0400 0.18 -0.5
398,253 + Dsui_0400 0.28 -1.8
398,257 - Dsui_0400 0.29 -3.3
398,335 + Dsui_0400 0.33 +0.5
398,358 - Dsui_0400 0.34 -3.0
398,415 + Dsui_0400 0.37 +0.5
398,452 + Dsui_0400 0.39 -1.5
398,455 + Dsui_0400 0.39 +0.5
398,522 + Dsui_0400 0.43 -1.5
398,548 - Dsui_0400 0.44 -3.5
398,662 - Dsui_0400 0.50 -3.1
398,725 + Dsui_0400 0.54 +0.5
398,946 + +0.5
398,959 - Dsui_0400 0.66 -2.9
398,985 + Dsui_0400 0.68 -2.5
399,218 - Dsui_0400 0.80 -3.0
399,325 + Dsui_0400 0.86 +0.5
399,333 - Dsui_0400 0.86 -3.2
399,501 + -1.1
399,570 + +0.5
399,603 - -3.0
399,631 + +0.5
399,639 - +0.2
399,639 - -0.0
399,660 + -0.5
399,686 - -0.6
400,103 + +0.5
400,220 - Dsui_0401 0.51 -3.6
400,346 - Dsui_0401 0.64 -0.1
400,492 - Dsui_0401 0.78 -1.7

Or see this region's nucleotide sequence