Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0396 and Dsui_0397 overlap by 4 nucleotides Dsui_0397 and Dsui_0398 overlap by 4 nucleotides Dsui_0398 and Dsui_0399 are separated by 2 nucleotides Dsui_0399 and Dsui_0400 are separated by 1 nucleotides
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Dsui_0397: Dsui_0397 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 395,051 to 395,878
_0397
Dsui_0398: Dsui_0398 - UDP-glucose-4-epimerase, at 395,875 to 396,888
_0398
Dsui_0399: Dsui_0399 - symmetrical bis(5'-nucleosyl)-tetraphosphatase, at 396,891 to 397,721
_0399
Dsui_0400: Dsui_0400 - putative nucleoside-diphosphate sugar epimerase, at 397,723 to 399,585
_0400
Position (kb) 395
396
397 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 394.897 kb on - strand, within Dsui_0396 at 395.016 kb on + strand at 395.092 kb on - strand at 395.109 kb on - strand at 395.133 kb on + strand at 395.158 kb on - strand, within Dsui_0397 at 395.184 kb on - strand at 395.184 kb on - strand at 395.206 kb on - strand, within Dsui_0397 at 395.280 kb on - strand, within Dsui_0397 at 395.427 kb on + strand, within Dsui_0397 at 395.560 kb on + strand, within Dsui_0397 at 395.729 kb on - strand, within Dsui_0397 at 395.747 kb on - strand, within Dsui_0397 at 395.873 kb on + strand at 395.878 kb on + strand at 396.068 kb on + strand, within Dsui_0398 at 396.094 kb on + strand, within Dsui_0398 at 396.147 kb on - strand, within Dsui_0398 at 396.213 kb on + strand at 396.232 kb on - strand, within Dsui_0398 at 396.276 kb on + strand, within Dsui_0398 at 396.489 kb on - strand, within Dsui_0398 at 396.510 kb on - strand, within Dsui_0398 at 396.535 kb on + strand, within Dsui_0398 at 396.560 kb on + strand, within Dsui_0398 at 396.578 kb on - strand, within Dsui_0398 at 396.612 kb on - strand, within Dsui_0398 at 396.633 kb on - strand, within Dsui_0398 at 396.740 kb on + strand, within Dsui_0398 at 396.740 kb on + strand, within Dsui_0398 at 396.748 kb on - strand, within Dsui_0398 at 396.804 kb on - strand at 396.864 kb on + strand at 396.872 kb on - strand at 397.007 kb on - strand, within Dsui_0399 at 397.141 kb on + strand, within Dsui_0399 at 397.266 kb on - strand, within Dsui_0399 at 397.406 kb on - strand at 397.504 kb on + strand, within Dsui_0399 at 397.538 kb on - strand, within Dsui_0399 at 397.600 kb on + strand at 397.659 kb on + strand at 397.756 kb on - strand at 397.819 kb on + strand at 397.841 kb on + strand at 397.841 kb on + strand at 397.841 kb on + strand at 397.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 394,897 - Dsui_0396 0.79 +0.5 395,016 + +1.1 395,092 - -1.5 395,109 - +0.5 395,133 + -2.1 395,158 - Dsui_0397 0.13 -1.1 395,184 - +0.5 395,184 - +0.5 395,206 - Dsui_0397 0.19 -1.1 395,280 - Dsui_0397 0.28 +2.1 395,427 + Dsui_0397 0.45 +0.8 395,560 + Dsui_0397 0.61 +0.5 395,729 - Dsui_0397 0.82 +1.3 395,747 - Dsui_0397 0.84 +1.8 395,873 + -0.5 395,878 + -1.1 396,068 + Dsui_0398 0.19 -2.7 396,094 + Dsui_0398 0.22 +0.5 396,147 - Dsui_0398 0.27 -3.8 396,213 + +0.5 396,232 - Dsui_0398 0.35 -4.9 396,276 + Dsui_0398 0.40 -0.5 396,489 - Dsui_0398 0.61 -1.5 396,510 - Dsui_0398 0.63 -3.2 396,535 + Dsui_0398 0.65 -0.5 396,560 + Dsui_0398 0.68 -0.5 396,578 - Dsui_0398 0.69 -0.5 396,612 - Dsui_0398 0.73 -2.8 396,633 - Dsui_0398 0.75 -4.2 396,740 + Dsui_0398 0.85 -0.5 396,740 + Dsui_0398 0.85 +0.5 396,748 - Dsui_0398 0.86 -3.6 396,804 - -2.9 396,864 + +0.5 396,872 - -2.9 397,007 - Dsui_0399 0.14 +4.9 397,141 + Dsui_0399 0.30 -0.5 397,266 - Dsui_0399 0.45 +4.6 397,406 - +3.2 397,504 + Dsui_0399 0.74 -2.8 397,538 - Dsui_0399 0.78 +4.5 397,600 + +0.5 397,659 + -1.8 397,756 - -2.7 397,819 + +0.5 397,841 + -0.5 397,841 + -3.0 397,841 + -0.5 397,841 + -0.5
Or see this region's nucleotide sequence