Strain Fitness in Dechlorosoma suillum PS around Dsui_0396

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0394 and Dsui_0395 are separated by 22 nucleotidesDsui_0395 and Dsui_0396 are separated by 124 nucleotidesDsui_0396 and Dsui_0397 overlap by 4 nucleotidesDsui_0397 and Dsui_0398 overlap by 4 nucleotides Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681 _0394 Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171 _0395 Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054 _0396 Dsui_0397: Dsui_0397 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 395,051 to 395,878 _0397 Dsui_0398: Dsui_0398 - UDP-glucose-4-epimerase, at 395,875 to 396,888 _0398 Position (kb) 394 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 393.299 kb on - strand, within Dsui_0394at 393.319 kb on - strand, within Dsui_0394at 393.423 kb on - strand, within Dsui_0394at 393.498 kb on - strandat 393.514 kb on + strand, within Dsui_0394at 393.519 kb on + strand, within Dsui_0394at 393.519 kb on + strand, within Dsui_0394at 393.683 kb on - strandat 393.795 kb on - strandat 393.976 kb on + strand, within Dsui_0395at 394.091 kb on - strand, within Dsui_0395at 394.172 kb on + strandat 394.172 kb on + strandat 394.187 kb on - strandat 394.287 kb on + strandat 394.301 kb on - strandat 394.362 kb on - strandat 394.507 kb on - strand, within Dsui_0396at 394.529 kb on + strand, within Dsui_0396at 394.625 kb on - strand, within Dsui_0396at 394.662 kb on - strand, within Dsui_0396at 394.687 kb on + strand, within Dsui_0396at 394.702 kb on + strand, within Dsui_0396at 394.710 kb on - strandat 394.710 kb on - strand, within Dsui_0396at 394.754 kb on - strand, within Dsui_0396at 394.776 kb on - strand, within Dsui_0396at 394.789 kb on - strand, within Dsui_0396at 394.800 kb on + strand, within Dsui_0396at 394.821 kb on + strand, within Dsui_0396at 394.828 kb on - strand, within Dsui_0396at 394.831 kb on + strand, within Dsui_0396at 394.897 kb on - strand, within Dsui_0396at 395.016 kb on + strandat 395.092 kb on - strandat 395.109 kb on - strandat 395.133 kb on + strandat 395.158 kb on - strand, within Dsui_0397at 395.184 kb on - strandat 395.184 kb on - strandat 395.206 kb on - strand, within Dsui_0397at 395.280 kb on - strand, within Dsui_0397at 395.427 kb on + strand, within Dsui_0397at 395.560 kb on + strand, within Dsui_0397at 395.729 kb on - strand, within Dsui_0397at 395.747 kb on - strand, within Dsui_0397at 395.873 kb on + strandat 395.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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393,299 - Dsui_0394 0.59 -1.1
393,319 - Dsui_0394 0.61 -1.1
393,423 - Dsui_0394 0.72 -0.5
393,498 - +0.5
393,514 + Dsui_0394 0.82 +0.8
393,519 + Dsui_0394 0.83 +0.3
393,519 + Dsui_0394 0.83 +0.6
393,683 - -1.1
393,795 - +0.5
393,976 + Dsui_0395 0.58 -1.4
394,091 - Dsui_0395 0.83 -0.5
394,172 + -0.0
394,172 + -0.7
394,187 - +0.5
394,287 + +0.1
394,301 - +0.5
394,362 - -2.1
394,507 - Dsui_0396 0.28 -1.8
394,529 + Dsui_0396 0.31 -0.5
394,625 - Dsui_0396 0.43 +0.5
394,662 - Dsui_0396 0.48 -1.1
394,687 + Dsui_0396 0.52 -1.1
394,702 + Dsui_0396 0.53 +0.5
394,710 - +0.5
394,710 - Dsui_0396 0.55 -2.1
394,754 - Dsui_0396 0.60 -0.8
394,776 - Dsui_0396 0.63 -0.5
394,789 - Dsui_0396 0.65 -2.9
394,800 + Dsui_0396 0.66 -0.7
394,821 + Dsui_0396 0.69 -0.1
394,828 - Dsui_0396 0.70 +0.5
394,831 + Dsui_0396 0.70 -0.6
394,897 - Dsui_0396 0.79 +0.5
395,016 + +1.1
395,092 - -1.5
395,109 - +0.5
395,133 + -2.1
395,158 - Dsui_0397 0.13 -1.1
395,184 - +0.5
395,184 - +0.5
395,206 - Dsui_0397 0.19 -1.1
395,280 - Dsui_0397 0.28 +2.1
395,427 + Dsui_0397 0.45 +0.8
395,560 + Dsui_0397 0.61 +0.5
395,729 - Dsui_0397 0.82 +1.3
395,747 - Dsui_0397 0.84 +1.8
395,873 + -0.5
395,878 + -1.1

Or see this region's nucleotide sequence