Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0394 and Dsui_0395 are separated by 22 nucleotides Dsui_0395 and Dsui_0396 are separated by 124 nucleotides Dsui_0396 and Dsui_0397 overlap by 4 nucleotides
Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681
_0394
Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171
_0395
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Dsui_0397: Dsui_0397 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 395,051 to 395,878
_0397
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 392.705 kb on + strand at 392.748 kb on - strand at 392.765 kb on - strand at 392.821 kb on - strand at 392.912 kb on + strand, within Dsui_0394 at 392.922 kb on + strand, within Dsui_0394 at 393.001 kb on - strand at 393.001 kb on - strand at 393.001 kb on - strand at 393.033 kb on + strand, within Dsui_0394 at 393.041 kb on - strand at 393.051 kb on + strand, within Dsui_0394 at 393.054 kb on + strand, within Dsui_0394 at 393.057 kb on - strand at 393.103 kb on + strand, within Dsui_0394 at 393.110 kb on + strand, within Dsui_0394 at 393.128 kb on - strand, within Dsui_0394 at 393.207 kb on - strand, within Dsui_0394 at 393.252 kb on - strand at 393.277 kb on + strand, within Dsui_0394 at 393.299 kb on - strand, within Dsui_0394 at 393.319 kb on - strand, within Dsui_0394 at 393.423 kb on - strand, within Dsui_0394 at 393.498 kb on - strand at 393.514 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.683 kb on - strand at 393.795 kb on - strand at 393.976 kb on + strand, within Dsui_0395 at 394.091 kb on - strand, within Dsui_0395 at 394.172 kb on + strand at 394.172 kb on + strand at 394.187 kb on - strand at 394.287 kb on + strand at 394.301 kb on - strand at 394.362 kb on - strand at 394.507 kb on - strand, within Dsui_0396 at 394.529 kb on + strand, within Dsui_0396 at 394.625 kb on - strand, within Dsui_0396 at 394.662 kb on - strand, within Dsui_0396 at 394.687 kb on + strand, within Dsui_0396 at 394.702 kb on + strand, within Dsui_0396 at 394.710 kb on - strand at 394.710 kb on - strand, within Dsui_0396 at 394.754 kb on - strand, within Dsui_0396 at 394.776 kb on - strand, within Dsui_0396 at 394.789 kb on - strand, within Dsui_0396 at 394.800 kb on + strand, within Dsui_0396 at 394.821 kb on + strand, within Dsui_0396 at 394.828 kb on - strand, within Dsui_0396 at 394.831 kb on + strand, within Dsui_0396 at 394.897 kb on - strand, within Dsui_0396 at 395.016 kb on + strand at 395.092 kb on - strand at 395.109 kb on - strand at 395.133 kb on + strand at 395.158 kb on - strand, within Dsui_0397
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 392,705 + +0.4 392,748 - +0.5 392,765 - -0.5 392,821 - -1.8 392,912 + Dsui_0394 0.18 +0.3 392,922 + Dsui_0394 0.19 +0.3 393,001 - -1.1 393,001 - +0.5 393,001 - +0.5 393,033 + Dsui_0394 0.31 +0.9 393,041 - -0.5 393,051 + Dsui_0394 0.33 +0.5 393,054 + Dsui_0394 0.33 +0.4 393,057 - +0.5 393,103 + Dsui_0394 0.38 +0.9 393,110 + Dsui_0394 0.39 +0.2 393,128 - Dsui_0394 0.41 +0.5 393,207 - Dsui_0394 0.49 +0.5 393,252 - +0.5 393,277 + Dsui_0394 0.57 +0.2 393,299 - Dsui_0394 0.59 -1.1 393,319 - Dsui_0394 0.61 -1.1 393,423 - Dsui_0394 0.72 -0.5 393,498 - +0.5 393,514 + Dsui_0394 0.82 +0.8 393,519 + Dsui_0394 0.83 +0.3 393,519 + Dsui_0394 0.83 +0.6 393,683 - -1.1 393,795 - +0.5 393,976 + Dsui_0395 0.58 -1.4 394,091 - Dsui_0395 0.83 -0.5 394,172 + -0.0 394,172 + -0.7 394,187 - +0.5 394,287 + +0.1 394,301 - +0.5 394,362 - -2.1 394,507 - Dsui_0396 0.28 -1.8 394,529 + Dsui_0396 0.31 -0.5 394,625 - Dsui_0396 0.43 +0.5 394,662 - Dsui_0396 0.48 -1.1 394,687 + Dsui_0396 0.52 -1.1 394,702 + Dsui_0396 0.53 +0.5 394,710 - +0.5 394,710 - Dsui_0396 0.55 -2.1 394,754 - Dsui_0396 0.60 -0.8 394,776 - Dsui_0396 0.63 -0.5 394,789 - Dsui_0396 0.65 -2.9 394,800 + Dsui_0396 0.66 -0.7 394,821 + Dsui_0396 0.69 -0.1 394,828 - Dsui_0396 0.70 +0.5 394,831 + Dsui_0396 0.70 -0.6 394,897 - Dsui_0396 0.79 +0.5 395,016 + +1.1 395,092 - -1.5 395,109 - +0.5 395,133 + -2.1 395,158 - Dsui_0397 0.13 -1.1
Or see this region's nucleotide sequence