Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0385 and Dsui_0386 overlap by 4 nucleotides Dsui_0386 and Dsui_0387 are separated by 55 nucleotides Dsui_0387 and Dsui_0388 are separated by 88 nucleotides Dsui_0388 and Dsui_0389 are separated by 12 nucleotides
Dsui_0385: Dsui_0385 - hypothetical protein, at 385,366 to 385,977
_0385
Dsui_0386: Dsui_0386 - thiol-disulfide isomerase-like thioredoxin, at 385,974 to 386,522
_0386
Dsui_0387: Dsui_0387 - 3-dehydroquinate dehydratase, type II, at 386,578 to 387,078
_0387
Dsui_0388: Dsui_0388 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 387,167 to 387,616
_0388
Dsui_0389: Dsui_0389 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 387,629 to 388,996
_0389
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.736 kb on + strand, within Dsui_0385 at 385.745 kb on + strand, within Dsui_0385 at 385.745 kb on + strand, within Dsui_0385 at 385.754 kb on - strand at 385.787 kb on + strand, within Dsui_0385 at 385.787 kb on + strand, within Dsui_0385 at 385.856 kb on + strand, within Dsui_0385 at 385.856 kb on + strand, within Dsui_0385 at 385.864 kb on + strand, within Dsui_0385 at 385.869 kb on + strand, within Dsui_0385 at 385.877 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.963 kb on - strand at 386.139 kb on + strand, within Dsui_0386 at 386.151 kb on + strand, within Dsui_0386 at 386.170 kb on + strand, within Dsui_0386 at 386.170 kb on + strand, within Dsui_0386 at 386.178 kb on - strand at 386.180 kb on + strand, within Dsui_0386 at 386.214 kb on - strand, within Dsui_0386 at 386.214 kb on - strand, within Dsui_0386 at 386.229 kb on - strand, within Dsui_0386 at 386.280 kb on - strand, within Dsui_0386 at 386.295 kb on + strand, within Dsui_0386 at 386.295 kb on + strand, within Dsui_0386 at 386.303 kb on - strand, within Dsui_0386 at 386.428 kb on + strand, within Dsui_0386 at 386.461 kb on - strand, within Dsui_0386 at 386.570 kb on - strand at 386.575 kb on + strand at 386.613 kb on + strand at 387.086 kb on + strand at 387.086 kb on + strand at 387.086 kb on + strand at 387.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 385,736 + Dsui_0385 0.60 -1.0 385,745 + Dsui_0385 0.62 +0.2 385,745 + Dsui_0385 0.62 -0.9 385,754 - +0.5 385,787 + Dsui_0385 0.69 -1.8 385,787 + Dsui_0385 0.69 -0.1 385,856 + Dsui_0385 0.80 +0.3 385,856 + Dsui_0385 0.80 -1.7 385,864 + Dsui_0385 0.81 -0.4 385,869 + Dsui_0385 0.82 -0.9 385,877 - Dsui_0385 0.83 -1.8 385,887 - Dsui_0385 0.85 -0.1 385,887 - Dsui_0385 0.85 -1.5 385,887 - Dsui_0385 0.85 -1.1 385,963 - -1.5 386,139 + Dsui_0386 0.30 +1.5 386,151 + Dsui_0386 0.32 -1.8 386,170 + Dsui_0386 0.36 -0.6 386,170 + Dsui_0386 0.36 -0.5 386,178 - +0.5 386,180 + Dsui_0386 0.38 -0.1 386,214 - Dsui_0386 0.44 +1.5 386,214 - Dsui_0386 0.44 -2.1 386,229 - Dsui_0386 0.46 -0.5 386,280 - Dsui_0386 0.56 -1.8 386,295 + Dsui_0386 0.58 -3.5 386,295 + Dsui_0386 0.58 -1.1 386,303 - Dsui_0386 0.60 +0.5 386,428 + Dsui_0386 0.83 +0.5 386,461 - Dsui_0386 0.89 +0.5 386,570 - -2.8 386,575 + +3.7 386,613 + +3.4 387,086 + +2.8 387,086 + +3.4 387,086 + +3.7 387,134 + +2.3
Or see this region's nucleotide sequence