Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0381 and Dsui_0382 are separated by 1 nucleotides Dsui_0382 and Dsui_0383 are separated by 123 nucleotides Dsui_0383 and Dsui_0384 are separated by 99 nucleotides
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228
_0382
Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864
_0383
Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313
_0384
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 381.634 kb on + strand, within Dsui_0381 at 381.649 kb on + strand, within Dsui_0381 at 381.657 kb on - strand, within Dsui_0381 at 381.671 kb on + strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.693 kb on - strand, within Dsui_0381 at 381.871 kb on - strand at 381.881 kb on + strand at 381.881 kb on + strand, within Dsui_0381 at 381.946 kb on + strand at 381.972 kb on + strand, within Dsui_0381 at 382.031 kb on + strand, within Dsui_0381 at 382.036 kb on + strand, within Dsui_0381 at 382.039 kb on - strand, within Dsui_0381 at 382.078 kb on + strand, within Dsui_0381 at 382.156 kb on - strand, within Dsui_0381 at 382.417 kb on - strand at 382.485 kb on + strand at 382.493 kb on - strand at 382.584 kb on - strand at 382.607 kb on - strand at 382.613 kb on + strand at 382.642 kb on - strand at 382.720 kb on - strand, within Dsui_0382 at 382.725 kb on - strand, within Dsui_0382 at 382.745 kb on + strand, within Dsui_0382 at 382.906 kb on + strand, within Dsui_0382 at 382.914 kb on - strand, within Dsui_0382 at 382.958 kb on + strand, within Dsui_0382 at 382.965 kb on + strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.139 kb on - strand, within Dsui_0382 at 383.175 kb on + strand at 383.175 kb on + strand at 383.183 kb on - strand at 383.183 kb on - strand at 383.238 kb on - strand at 383.271 kb on - strand at 383.281 kb on - strand at 383.321 kb on - strand at 383.350 kb on + strand at 383.354 kb on - strand at 383.358 kb on - strand at 383.413 kb on - strand at 383.432 kb on - strand, within Dsui_0383 at 383.440 kb on + strand, within Dsui_0383 at 383.528 kb on + strand, within Dsui_0383 at 383.543 kb on + strand, within Dsui_0383 at 383.573 kb on - strand, within Dsui_0383 at 383.632 kb on + strand, within Dsui_0383 at 383.640 kb on - strand, within Dsui_0383 at 383.734 kb on - strand, within Dsui_0383 at 383.762 kb on + strand, within Dsui_0383 at 383.770 kb on - strand, within Dsui_0383 at 383.783 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.828 kb on + strand at 383.833 kb on + strand at 383.905 kb on - strand at 383.977 kb on + strand at 384.149 kb on - strand, within Dsui_0384 at 384.165 kb on - strand, within Dsui_0384
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 381,634 + Dsui_0381 0.50 -0.5 381,649 + Dsui_0381 0.51 -0.2 381,657 - Dsui_0381 0.52 -1.8 381,671 + Dsui_0381 0.52 -3.6 381,679 - Dsui_0381 0.53 -0.5 381,679 - Dsui_0381 0.53 -1.1 381,693 - Dsui_0381 0.54 -1.1 381,871 - +0.5 381,881 + -1.1 381,881 + Dsui_0381 0.63 -2.3 381,946 + +0.5 381,972 + Dsui_0381 0.68 -2.3 382,031 + Dsui_0381 0.71 -1.3 382,036 + Dsui_0381 0.72 -0.1 382,039 - Dsui_0381 0.72 +0.5 382,078 + Dsui_0381 0.74 +1.1 382,156 - Dsui_0381 0.78 -2.8 382,417 - +0.5 382,485 + -1.1 382,493 - -0.5 382,584 - -1.2 382,607 - -0.4 382,613 + -2.5 382,642 - +0.5 382,720 - Dsui_0382 0.22 -0.2 382,725 - Dsui_0382 0.23 +1.5 382,745 + Dsui_0382 0.26 +0.5 382,906 + Dsui_0382 0.50 -0.5 382,914 - Dsui_0382 0.52 -0.0 382,958 + Dsui_0382 0.58 -0.5 382,965 + Dsui_0382 0.59 +0.5 383,032 - Dsui_0382 0.70 -1.1 383,032 - Dsui_0382 0.70 -0.2 383,139 - Dsui_0382 0.86 +0.5 383,175 + +0.5 383,175 + -2.3 383,183 - -0.7 383,183 - +0.3 383,238 - +0.0 383,271 - +0.5 383,281 - -1.5 383,321 - +0.5 383,350 + +0.2 383,354 - +0.5 383,358 - -2.1 383,413 - +0.5 383,432 - Dsui_0383 0.16 -1.1 383,440 + Dsui_0383 0.17 +1.5 383,528 + Dsui_0383 0.34 +0.1 383,543 + Dsui_0383 0.37 -1.7 383,573 - Dsui_0383 0.43 -1.1 383,632 + Dsui_0383 0.55 -0.3 383,640 - Dsui_0383 0.56 -0.5 383,734 - Dsui_0383 0.74 +0.1 383,762 + Dsui_0383 0.80 +0.1 383,770 - Dsui_0383 0.81 -2.1 383,783 + Dsui_0383 0.84 -0.2 383,789 + Dsui_0383 0.85 +0.0 383,789 + Dsui_0383 0.85 +0.7 383,828 + -0.0 383,833 + -1.3 383,905 - +0.4 383,977 + +0.5 384,149 - Dsui_0384 0.14 +1.6 384,165 - Dsui_0384 0.15 +0.9
Or see this region's nucleotide sequence