Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0305 and Dsui_0306 are separated by 136 nucleotides Dsui_0306 and Dsui_0307 are separated by 31 nucleotides Dsui_0307 and Dsui_0308 are separated by 132 nucleotides
Dsui_0305: Dsui_0305 - transcriptional regulator, at 306,236 to 307,129
_0305
Dsui_0306: Dsui_0306 - putative permease, at 307,266 to 308,054
_0306
Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693
_0307
Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151
_0308
Position (kb)
308
309
310 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 307.109 kb on + strand at 307.369 kb on - strand, within Dsui_0306 at 307.597 kb on - strand, within Dsui_0306 at 307.665 kb on + strand, within Dsui_0306 at 307.714 kb on - strand at 307.803 kb on - strand, within Dsui_0306 at 307.848 kb on - strand, within Dsui_0306 at 307.936 kb on + strand, within Dsui_0306 at 308.070 kb on + strand at 308.120 kb on - strand at 308.315 kb on - strand at 308.402 kb on - strand, within Dsui_0307 at 308.434 kb on - strand, within Dsui_0307 at 308.632 kb on + strand at 308.640 kb on - strand, within Dsui_0307 at 308.667 kb on + strand, within Dsui_0307 at 308.679 kb on + strand, within Dsui_0307 at 308.684 kb on + strand, within Dsui_0307 at 308.694 kb on + strand, within Dsui_0307 at 308.697 kb on - strand, within Dsui_0307 at 308.735 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.777 kb on - strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.887 kb on + strand, within Dsui_0307 at 309.116 kb on + strand, within Dsui_0307 at 309.116 kb on + strand at 309.126 kb on + strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.134 kb on - strand, within Dsui_0307 at 309.217 kb on - strand, within Dsui_0307 at 309.323 kb on - strand, within Dsui_0307 at 309.504 kb on + strand at 309.573 kb on - strand at 309.603 kb on + strand at 309.659 kb on + strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.769 kb on + strand at 309.928 kb on - strand at 309.928 kb on - strand at 310.155 kb on + strand at 310.286 kb on - strand, within Dsui_0308 at 310.292 kb on + strand, within Dsui_0308 at 310.389 kb on + strand at 310.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 307,109 + +0.5 307,369 - Dsui_0306 0.13 -1.8 307,597 - Dsui_0306 0.42 -0.5 307,665 + Dsui_0306 0.51 -1.5 307,714 - -0.5 307,803 - Dsui_0306 0.68 -2.3 307,848 - Dsui_0306 0.74 +0.5 307,936 + Dsui_0306 0.85 -0.5 308,070 + +0.5 308,120 - -2.0 308,315 - +3.0 308,402 - Dsui_0307 0.20 +0.1 308,434 - Dsui_0307 0.22 +0.8 308,632 + +0.5 308,640 - Dsui_0307 0.34 +1.9 308,667 + Dsui_0307 0.36 -0.5 308,679 + Dsui_0307 0.37 -1.5 308,684 + Dsui_0307 0.37 +0.5 308,694 + Dsui_0307 0.38 -0.5 308,697 - Dsui_0307 0.38 -0.3 308,735 + Dsui_0307 0.40 -0.5 308,769 + Dsui_0307 0.42 -1.5 308,769 + Dsui_0307 0.42 -0.5 308,769 + Dsui_0307 0.42 -0.5 308,777 - Dsui_0307 0.43 +0.5 308,832 + Dsui_0307 0.46 +0.5 308,832 + Dsui_0307 0.46 -1.8 308,832 + Dsui_0307 0.46 -0.5 308,832 + Dsui_0307 0.46 -0.5 308,887 + Dsui_0307 0.50 -1.0 309,116 + Dsui_0307 0.64 +0.5 309,116 + +0.5 309,126 + Dsui_0307 0.65 +0.5 309,129 - Dsui_0307 0.65 +0.9 309,129 - Dsui_0307 0.65 +0.3 309,134 - Dsui_0307 0.65 -0.3 309,217 - Dsui_0307 0.70 -0.2 309,323 - Dsui_0307 0.77 +0.3 309,504 + +0.5 309,573 - +0.9 309,603 + +0.5 309,659 + -0.5 309,667 - +0.5 309,667 - +0.7 309,667 - -1.2 309,769 + -0.5 309,928 - -0.5 309,928 - -0.5 310,155 + +0.5 310,286 - Dsui_0308 0.35 +0.1 310,292 + Dsui_0308 0.35 -2.1 310,389 + -0.5 310,427 + +0.5
Or see this region's nucleotide sequence