Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0206 and Dsui_0207 overlap by 4 nucleotides Dsui_0207 and Dsui_0208 overlap by 1 nucleotides Dsui_0208 and Dsui_0209 overlap by 1 nucleotides
Dsui_0206: Dsui_0206 - phage conserved hypothetical protein, at 205,448 to 206,554
_0206
Dsui_0207: Dsui_0207 - hypothetical protein, at 206,551 to 206,979
_0207
Dsui_0208: Dsui_0208 - hypothetical protein, at 206,979 to 210,539
_0208
Dsui_0209: Dsui_0209 - hypothetical protein, at 210,539 to 211,630
_0209
Position (kb) 206
207
208
209
210
211 Strain fitness (log2 ratio) -2
-1
0
1 at 205.989 kb on + strand, within Dsui_0206 at 206.066 kb on - strand, within Dsui_0206 at 206.246 kb on - strand, within Dsui_0206 at 206.291 kb on + strand, within Dsui_0206 at 206.403 kb on + strand, within Dsui_0206 at 206.403 kb on + strand, within Dsui_0206 at 206.411 kb on - strand, within Dsui_0206 at 206.595 kb on - strand, within Dsui_0207 at 206.628 kb on + strand, within Dsui_0207 at 206.777 kb on + strand, within Dsui_0207 at 207.020 kb on + strand at 207.232 kb on + strand at 207.340 kb on + strand, within Dsui_0208 at 207.390 kb on + strand, within Dsui_0208 at 207.398 kb on - strand, within Dsui_0208 at 207.398 kb on - strand, within Dsui_0208 at 207.408 kb on - strand, within Dsui_0208 at 207.430 kb on + strand at 207.430 kb on + strand, within Dsui_0208 at 207.430 kb on + strand, within Dsui_0208 at 207.430 kb on + strand, within Dsui_0208 at 207.527 kb on - strand, within Dsui_0208 at 207.556 kb on - strand, within Dsui_0208 at 207.596 kb on - strand, within Dsui_0208 at 207.620 kb on - strand, within Dsui_0208 at 207.655 kb on - strand, within Dsui_0208 at 207.655 kb on - strand, within Dsui_0208 at 207.717 kb on + strand, within Dsui_0208 at 207.718 kb on + strand at 207.748 kb on + strand at 207.764 kb on + strand, within Dsui_0208 at 207.892 kb on + strand, within Dsui_0208 at 207.911 kb on + strand, within Dsui_0208 at 207.936 kb on - strand, within Dsui_0208 at 208.044 kb on - strand, within Dsui_0208 at 208.090 kb on + strand, within Dsui_0208 at 208.133 kb on + strand, within Dsui_0208 at 208.201 kb on - strand, within Dsui_0208 at 208.276 kb on + strand, within Dsui_0208 at 208.358 kb on - strand, within Dsui_0208 at 208.526 kb on + strand, within Dsui_0208 at 208.541 kb on + strand at 208.547 kb on - strand, within Dsui_0208 at 208.618 kb on - strand, within Dsui_0208 at 208.631 kb on + strand, within Dsui_0208 at 208.691 kb on + strand, within Dsui_0208 at 208.691 kb on + strand, within Dsui_0208 at 208.816 kb on + strand, within Dsui_0208 at 209.068 kb on + strand at 209.083 kb on + strand, within Dsui_0208 at 209.238 kb on - strand, within Dsui_0208 at 209.302 kb on - strand, within Dsui_0208 at 209.410 kb on + strand, within Dsui_0208 at 209.418 kb on - strand, within Dsui_0208 at 209.445 kb on + strand, within Dsui_0208 at 209.453 kb on - strand, within Dsui_0208 at 209.499 kb on - strand, within Dsui_0208 at 209.624 kb on - strand, within Dsui_0208 at 209.767 kb on + strand at 209.767 kb on + strand, within Dsui_0208 at 209.767 kb on + strand, within Dsui_0208 at 209.775 kb on - strand, within Dsui_0208 at 209.775 kb on - strand, within Dsui_0208 at 209.787 kb on + strand, within Dsui_0208 at 209.847 kb on + strand, within Dsui_0208 at 209.847 kb on + strand, within Dsui_0208 at 209.855 kb on - strand, within Dsui_0208 at 209.933 kb on - strand, within Dsui_0208 at 209.981 kb on - strand, within Dsui_0208 at 210.023 kb on + strand, within Dsui_0208 at 210.030 kb on - strand, within Dsui_0208 at 210.123 kb on - strand, within Dsui_0208 at 210.138 kb on - strand, within Dsui_0208 at 210.363 kb on - strand at 210.432 kb on + strand at 210.452 kb on + strand at 210.477 kb on - strand at 210.704 kb on + strand, within Dsui_0209 at 210.832 kb on + strand, within Dsui_0209 at 210.971 kb on + strand at 211.087 kb on + strand, within Dsui_0209 at 211.258 kb on - strand, within Dsui_0209 at 211.304 kb on + strand, within Dsui_0209 at 211.462 kb on - strand, within Dsui_0209
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 205,989 + Dsui_0206 0.49 -0.7 206,066 - Dsui_0206 0.56 -1.1 206,246 - Dsui_0206 0.72 +0.9 206,291 + Dsui_0206 0.76 +0.9 206,403 + Dsui_0206 0.86 -0.1 206,403 + Dsui_0206 0.86 -1.4 206,411 - Dsui_0206 0.87 -0.1 206,595 - Dsui_0207 0.10 +0.9 206,628 + Dsui_0207 0.18 +0.9 206,777 + Dsui_0207 0.53 +0.9 207,020 + +0.9 207,232 + -0.1 207,340 + Dsui_0208 0.10 +0.9 207,390 + Dsui_0208 0.12 -0.6 207,398 - Dsui_0208 0.12 +1.0 207,398 - Dsui_0208 0.12 +1.0 207,408 - Dsui_0208 0.12 +1.0 207,430 + +1.0 207,430 + Dsui_0208 0.13 -0.0 207,430 + Dsui_0208 0.13 -0.0 207,430 + Dsui_0208 0.13 +1.0 207,527 - Dsui_0208 0.15 +1.0 207,556 - Dsui_0208 0.16 +1.0 207,596 - Dsui_0208 0.17 +1.0 207,620 - Dsui_0208 0.18 -0.0 207,655 - Dsui_0208 0.19 -0.0 207,655 - Dsui_0208 0.19 +1.0 207,717 + Dsui_0208 0.21 -0.0 207,718 + +1.0 207,748 + +1.0 207,764 + Dsui_0208 0.22 -0.0 207,892 + Dsui_0208 0.26 +1.0 207,911 + Dsui_0208 0.26 -0.0 207,936 - Dsui_0208 0.27 +1.0 208,044 - Dsui_0208 0.30 -0.6 208,090 + Dsui_0208 0.31 +1.0 208,133 + Dsui_0208 0.32 -0.0 208,201 - Dsui_0208 0.34 +1.0 208,276 + Dsui_0208 0.36 +1.0 208,358 - Dsui_0208 0.39 -0.0 208,526 + Dsui_0208 0.43 +1.0 208,541 + +1.0 208,547 - Dsui_0208 0.44 +1.0 208,618 - Dsui_0208 0.46 -0.6 208,631 + Dsui_0208 0.46 +1.0 208,691 + Dsui_0208 0.48 -2.5 208,691 + Dsui_0208 0.48 -0.4 208,816 + Dsui_0208 0.52 +1.0 209,068 + +1.0 209,083 + Dsui_0208 0.59 -0.0 209,238 - Dsui_0208 0.63 +1.0 209,302 - Dsui_0208 0.65 +1.0 209,410 + Dsui_0208 0.68 -1.0 209,418 - Dsui_0208 0.68 +1.0 209,445 + Dsui_0208 0.69 -1.4 209,453 - Dsui_0208 0.69 +1.0 209,499 - Dsui_0208 0.71 -0.0 209,624 - Dsui_0208 0.74 -0.0 209,767 + -0.0 209,767 + Dsui_0208 0.78 -1.0 209,767 + Dsui_0208 0.78 -1.6 209,775 - Dsui_0208 0.79 -2.5 209,775 - Dsui_0208 0.79 +1.0 209,787 + Dsui_0208 0.79 -1.4 209,847 + Dsui_0208 0.81 +1.0 209,847 + Dsui_0208 0.81 -0.0 209,855 - Dsui_0208 0.81 -1.4 209,933 - Dsui_0208 0.83 +1.0 209,981 - Dsui_0208 0.84 +1.0 210,023 + Dsui_0208 0.85 -0.0 210,030 - Dsui_0208 0.86 -1.6 210,123 - Dsui_0208 0.88 -1.0 210,138 - Dsui_0208 0.89 -0.9 210,363 - +1.0 210,432 + +1.0 210,452 + +1.0 210,477 - -1.0 210,704 + Dsui_0209 0.15 +1.0 210,832 + Dsui_0209 0.27 +1.0 210,971 + +1.0 211,087 + Dsui_0209 0.50 -1.0 211,258 - Dsui_0209 0.66 -1.6 211,304 + Dsui_0209 0.70 -1.0 211,462 - Dsui_0209 0.85 -1.6
Or see this region's nucleotide sequence