Strain Fitness in Dechlorosoma suillum PS around Dsui_0174

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0173 and Dsui_0174 overlap by 4 nucleotidesDsui_0174 and Dsui_0175 overlap by 1 nucleotides Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546 _0173 Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073 _0174 Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881 _0175 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1at 176.628 kb on - strand, within Dsui_0173at 176.629 kb on + strandat 176.728 kb on - strand, within Dsui_0173at 176.849 kb on + strand, within Dsui_0173at 176.870 kb on - strandat 176.904 kb on + strandat 176.944 kb on - strandat 177.139 kb on + strandat 177.195 kb on + strandat 177.200 kb on + strandat 177.336 kb on + strand, within Dsui_0173at 177.443 kb on + strandat 177.534 kb on - strandat 177.649 kb on - strandat 177.705 kb on + strandat 177.766 kb on + strand, within Dsui_0174at 177.774 kb on - strand, within Dsui_0174at 177.787 kb on + strand, within Dsui_0174at 177.945 kb on + strand, within Dsui_0174at 177.995 kb on - strandat 178.228 kb on + strandat 178.265 kb on + strand, within Dsui_0175at 178.349 kb on + strand, within Dsui_0175at 178.354 kb on + strand, within Dsui_0175at 178.371 kb on - strand, within Dsui_0175at 178.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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176,628 - Dsui_0173 0.49 -1.7
176,629 + +0.9
176,728 - Dsui_0173 0.55 -0.7
176,849 + Dsui_0173 0.61 -1.1
176,870 - +0.9
176,904 + +0.9
176,944 - +0.9
177,139 + +0.9
177,195 + +0.9
177,200 + +0.9
177,336 + Dsui_0173 0.88 +0.9
177,443 + -0.1
177,534 - -1.1
177,649 - +0.9
177,705 + -0.1
177,766 + Dsui_0174 0.42 -1.1
177,774 - Dsui_0174 0.44 -1.7
177,787 + Dsui_0174 0.46 -1.4
177,945 + Dsui_0174 0.76 -2.3
177,995 - +0.9
178,228 + -0.7
178,265 + Dsui_0175 0.11 +0.9
178,349 + Dsui_0175 0.15 +0.9
178,354 + Dsui_0175 0.16 +1.5
178,371 - Dsui_0175 0.16 -0.1
178,847 - -0.1

Or see this region's nucleotide sequence