Strain Fitness in Dechlorosoma suillum PS around Dsui_0133

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0132 and Dsui_0133 are separated by 145 nucleotidesDsui_0133 and Dsui_0134 are separated by 471 nucleotides Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303 _0132 Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519 _0133 Dsui_0134: Dsui_0134 - negative regulator of beta-lactamase expression, at 135,991 to 136,563 _0134 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 133.467 kb on - strand, within Dsui_0132at 133.472 kb on - strand, within Dsui_0132at 133.554 kb on - strandat 133.622 kb on + strand, within Dsui_0132at 133.622 kb on + strand, within Dsui_0132at 133.649 kb on + strand, within Dsui_0132at 133.650 kb on + strand, within Dsui_0132at 133.684 kb on + strand, within Dsui_0132at 133.685 kb on + strand, within Dsui_0132at 133.822 kb on - strand, within Dsui_0132at 133.835 kb on - strand, within Dsui_0132at 133.840 kb on - strand, within Dsui_0132at 133.885 kb on + strandat 133.895 kb on - strand, within Dsui_0132at 133.895 kb on - strand, within Dsui_0132at 133.961 kb on - strand, within Dsui_0132at 133.998 kb on - strand, within Dsui_0132at 134.049 kb on - strandat 134.095 kb on - strand, within Dsui_0132at 134.106 kb on - strand, within Dsui_0132at 134.140 kb on + strand, within Dsui_0132at 134.243 kb on + strandat 134.264 kb on + strandat 134.305 kb on - strandat 134.319 kb on + strandat 134.352 kb on - strandat 134.412 kb on + strandat 134.412 kb on + strandat 134.414 kb on - strandat 134.514 kb on - strandat 134.587 kb on + strand, within Dsui_0133at 134.590 kb on - strand, within Dsui_0133at 134.626 kb on - strand, within Dsui_0133at 135.453 kb on - strandat 135.472 kb on + strandat 135.494 kb on + strandat 135.572 kb on + strandat 135.580 kb on - strandat 135.727 kb on + strandat 135.735 kb on - strandat 135.735 kb on - strandat 135.812 kb on - strandat 135.819 kb on - strandat 135.863 kb on + strandat 135.894 kb on + strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.924 kb on + strandat 135.926 kb on - strandat 135.926 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.947 kb on - strandat 136.005 kb on - strandat 136.007 kb on + strandat 136.007 kb on + strandat 136.015 kb on - strandat 136.015 kb on - strandat 136.023 kb on - strandat 136.068 kb on - strand, within Dsui_0134at 136.073 kb on + strand, within Dsui_0134at 136.081 kb on - strand, within Dsui_0134at 136.129 kb on - strand, within Dsui_0134at 136.152 kb on - strandat 136.185 kb on + strand, within Dsui_0134at 136.260 kb on - strand, within Dsui_0134at 136.260 kb on - strand, within Dsui_0134at 136.270 kb on - strand, within Dsui_0134at 136.299 kb on + strandat 136.378 kb on - strand, within Dsui_0134at 136.384 kb on + strand, within Dsui_0134at 136.445 kb on + strand, within Dsui_0134at 136.456 kb on + strand, within Dsui_0134at 136.489 kb on - strand, within Dsui_0134at 136.518 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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133,467 - Dsui_0132 0.28 -1.5
133,472 - Dsui_0132 0.28 -1.1
133,554 - +0.9
133,622 + Dsui_0132 0.41 -0.4
133,622 + Dsui_0132 0.41 -1.5
133,649 + Dsui_0132 0.43 +0.9
133,650 + Dsui_0132 0.44 -0.0
133,684 + Dsui_0132 0.46 +0.4
133,685 + Dsui_0132 0.47 +0.1
133,822 - Dsui_0132 0.58 -0.1
133,835 - Dsui_0132 0.59 -0.1
133,840 - Dsui_0132 0.60 -0.1
133,885 + +0.9
133,895 - Dsui_0132 0.65 -0.1
133,895 - Dsui_0132 0.65 -1.9
133,961 - Dsui_0132 0.70 +2.1
133,998 - Dsui_0132 0.74 -0.1
134,049 - +0.9
134,095 - Dsui_0132 0.82 +0.9
134,106 - Dsui_0132 0.83 +0.9
134,140 + Dsui_0132 0.86 +0.3
134,243 + +0.5
134,264 + -0.1
134,305 - +0.9
134,319 + -0.7
134,352 - -0.1
134,412 + -1.1
134,412 + +1.6
134,414 - +0.6
134,514 - +0.3
134,587 + Dsui_0133 0.13 +0.9
134,590 - Dsui_0133 0.13 +0.4
134,626 - Dsui_0133 0.17 +0.4
135,453 - +1.0
135,472 + +0.9
135,494 + +0.9
135,572 + -0.7
135,580 - -3.5
135,727 + -0.1
135,735 - +0.1
135,735 - +0.4
135,812 - -0.4
135,819 - -0.4
135,863 + -0.7
135,894 + -2.3
135,902 - -0.3
135,902 - +0.4
135,902 - +3.5
135,902 - +0.2
135,902 - -0.0
135,924 + -1.7
135,926 - +0.6
135,926 - +0.7
135,932 - +0.4
135,932 - +1.1
135,947 - +0.6
136,005 - -0.7
136,007 + +0.9
136,007 + -0.7
136,015 - -2.7
136,015 - +0.9
136,023 - +0.1
136,068 - Dsui_0134 0.13 +0.9
136,073 + Dsui_0134 0.14 +0.9
136,081 - Dsui_0134 0.16 -2.6
136,129 - Dsui_0134 0.24 -2.1
136,152 - +0.9
136,185 + Dsui_0134 0.34 -0.7
136,260 - Dsui_0134 0.47 -1.5
136,260 - Dsui_0134 0.47 -0.1
136,270 - Dsui_0134 0.49 -0.7
136,299 + -0.1
136,378 - Dsui_0134 0.68 +0.9
136,384 + Dsui_0134 0.69 -0.1
136,445 + Dsui_0134 0.79 +0.9
136,456 + Dsui_0134 0.81 -0.1
136,489 - Dsui_0134 0.87 +0.9
136,518 + +0.9

Or see this region's nucleotide sequence