Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0097 and Dsui_0098 are separated by 88 nucleotides Dsui_0098 and Dsui_0099 are separated by 3 nucleotides Dsui_0099 and Dsui_0100 overlap by 4 nucleotides Dsui_0100 and Dsui_0101 are separated by 166 nucleotides
Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750
_0097
Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033
_0098
Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696
_0099
Dsui_0100: Dsui_0100 - phosphoheptose isomerase, at 98,693 to 99,286
_0100
Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919
_0101
Position (kb) 98
99
100 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 97.709 kb on - strand at 97.739 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.752 kb on - strand at 98.004 kb on + strand, within Dsui_0098 at 98.066 kb on + strand at 98.066 kb on + strand at 98.098 kb on + strand at 98.106 kb on - strand, within Dsui_0099 at 98.158 kb on - strand, within Dsui_0099 at 98.213 kb on + strand, within Dsui_0099 at 98.243 kb on - strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.530 kb on - strand, within Dsui_0099 at 98.710 kb on + strand at 99.298 kb on - strand at 99.339 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.423 kb on - strand at 99.431 kb on + strand at 99.454 kb on - strand at 99.504 kb on + strand at 99.512 kb on - strand at 99.512 kb on - strand at 99.589 kb on - strand at 99.594 kb on + strand at 99.651 kb on - strand, within Dsui_0101 at 99.718 kb on - strand, within Dsui_0101 at 99.720 kb on + strand, within Dsui_0101 at 99.728 kb on - strand, within Dsui_0101 at 99.731 kb on + strand, within Dsui_0101 at 99.771 kb on + strand, within Dsui_0101 at 99.830 kb on + strand, within Dsui_0101 at 99.836 kb on - strand, within Dsui_0101 at 99.838 kb on + strand, within Dsui_0101 at 99.838 kb on - strand, within Dsui_0101 at 99.846 kb on - strand, within Dsui_0101 at 99.846 kb on - strand, within Dsui_0101 at 99.870 kb on - strand, within Dsui_0101 at 99.960 kb on - strand, within Dsui_0101 at 100.002 kb on - strand, within Dsui_0101 at 100.004 kb on + strand, within Dsui_0101 at 100.012 kb on - strand, within Dsui_0101 at 100.024 kb on + strand, within Dsui_0101 at 100.032 kb on - strand, within Dsui_0101 at 100.032 kb on - strand, within Dsui_0101 at 100.096 kb on + strand, within Dsui_0101 at 100.104 kb on - strand, within Dsui_0101 at 100.204 kb on - strand, within Dsui_0101 at 100.211 kb on + strand, within Dsui_0101 at 100.240 kb on - strand, within Dsui_0101 at 100.269 kb on - strand, within Dsui_0101
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 97,709 - +2.9 97,739 + +0.2 97,744 + +0.1 97,744 + +0.3 97,744 + +0.2 97,744 + -0.1 97,752 - +1.5 98,004 + Dsui_0098 0.85 -0.1 98,066 + +0.9 98,066 + +0.9 98,098 + -1.1 98,106 - Dsui_0099 0.10 -0.2 98,158 - Dsui_0099 0.18 -3.9 98,213 + Dsui_0099 0.27 -0.7 98,243 - Dsui_0099 0.31 -3.1 98,407 + Dsui_0099 0.56 -0.7 98,407 + Dsui_0099 0.56 -0.1 98,530 - Dsui_0099 0.75 -3.3 98,710 + -1.5 99,298 - +4.9 99,339 - -1.7 99,423 - -1.5 99,423 - -0.1 99,423 - +0.9 99,423 - +0.9 99,431 + +0.2 99,454 - -0.1 99,504 + -0.9 99,512 - +0.9 99,512 - +1.9 99,589 - +0.9 99,594 + -0.8 99,651 - Dsui_0101 0.13 +0.9 99,718 - Dsui_0101 0.18 -0.7 99,720 + Dsui_0101 0.18 -0.8 99,728 - Dsui_0101 0.19 -0.7 99,731 + Dsui_0101 0.19 +0.1 99,771 + Dsui_0101 0.22 -0.6 99,830 + Dsui_0101 0.26 -0.4 99,836 - Dsui_0101 0.26 +0.9 99,838 + Dsui_0101 0.26 -0.7 99,838 - Dsui_0101 0.26 -1.9 99,846 - Dsui_0101 0.27 -1.1 99,846 - Dsui_0101 0.27 -0.1 99,870 - Dsui_0101 0.28 +0.9 99,960 - Dsui_0101 0.35 -1.1 100,002 - Dsui_0101 0.37 +0.9 100,004 + Dsui_0101 0.38 -0.4 100,012 - Dsui_0101 0.38 -0.7 100,024 + Dsui_0101 0.39 -0.6 100,032 - Dsui_0101 0.39 -1.1 100,032 - Dsui_0101 0.39 +0.9 100,096 + Dsui_0101 0.44 -0.4 100,104 - Dsui_0101 0.44 -1.5 100,204 - Dsui_0101 0.51 -2.8 100,211 + Dsui_0101 0.52 -0.9 100,240 - Dsui_0101 0.54 -0.1 100,269 - Dsui_0101 0.56 +0.9
Or see this region's nucleotide sequence