Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0096 and Dsui_0097 are separated by 119 nucleotides Dsui_0097 and Dsui_0098 are separated by 88 nucleotides Dsui_0098 and Dsui_0099 are separated by 3 nucleotides Dsui_0099 and Dsui_0100 overlap by 4 nucleotides
Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190
_0096
Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750
_0097
Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033
_0098
Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696
_0099
Dsui_0100: Dsui_0100 - phosphoheptose isomerase, at 98,693 to 99,286
_0100
Position (kb) 97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 96.346 kb on - strand, within Dsui_0096 at 96.389 kb on + strand, within Dsui_0096 at 96.402 kb on - strand, within Dsui_0096 at 96.443 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.613 kb on + strand, within Dsui_0096 at 96.621 kb on - strand, within Dsui_0096 at 96.621 kb on - strand at 96.621 kb on - strand, within Dsui_0096 at 96.701 kb on - strand, within Dsui_0096 at 96.745 kb on + strand, within Dsui_0096 at 96.814 kb on + strand, within Dsui_0096 at 96.826 kb on + strand, within Dsui_0096 at 96.838 kb on + strand, within Dsui_0096 at 96.838 kb on + strand, within Dsui_0096 at 96.843 kb on + strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.951 kb on - strand, within Dsui_0096 at 97.029 kb on + strand at 97.032 kb on - strand at 97.057 kb on - strand at 97.057 kb on - strand at 97.072 kb on + strand at 97.249 kb on + strand at 97.381 kb on - strand, within Dsui_0097 at 97.442 kb on - strand at 97.444 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.478 kb on + strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.540 kb on - strand, within Dsui_0097 at 97.576 kb on - strand, within Dsui_0097 at 97.618 kb on + strand, within Dsui_0097 at 97.626 kb on - strand, within Dsui_0097 at 97.687 kb on - strand at 97.709 kb on - strand at 97.739 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.752 kb on - strand at 98.004 kb on + strand, within Dsui_0098 at 98.066 kb on + strand at 98.066 kb on + strand at 98.098 kb on + strand at 98.106 kb on - strand, within Dsui_0099 at 98.158 kb on - strand, within Dsui_0099 at 98.213 kb on + strand, within Dsui_0099 at 98.243 kb on - strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.530 kb on - strand, within Dsui_0099 at 98.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 96,346 - Dsui_0096 0.54 +0.9 96,389 + Dsui_0096 0.56 -0.0 96,402 - Dsui_0096 0.57 -0.1 96,443 + Dsui_0096 0.59 -0.1 96,613 + Dsui_0096 0.68 +0.1 96,613 + Dsui_0096 0.68 -0.1 96,613 + Dsui_0096 0.68 -0.4 96,621 - Dsui_0096 0.69 -0.1 96,621 - +0.9 96,621 - Dsui_0096 0.69 +0.9 96,701 - Dsui_0096 0.73 -1.5 96,745 + Dsui_0096 0.75 -0.1 96,814 + Dsui_0096 0.79 +0.5 96,826 + Dsui_0096 0.80 +0.2 96,838 + Dsui_0096 0.81 -0.2 96,838 + Dsui_0096 0.81 +0.4 96,843 + Dsui_0096 0.81 +0.4 96,846 - Dsui_0096 0.81 +0.9 96,846 - Dsui_0096 0.81 -0.7 96,951 - Dsui_0096 0.87 +0.9 97,029 + +0.7 97,032 - -1.2 97,057 - -1.5 97,057 - -0.7 97,072 + +0.4 97,249 + -0.0 97,381 - Dsui_0097 0.16 +1.5 97,442 - +0.9 97,444 + Dsui_0097 0.30 +0.1 97,473 + Dsui_0097 0.37 +0.6 97,473 + Dsui_0097 0.37 +0.3 97,478 + Dsui_0097 0.38 +0.3 97,535 - Dsui_0097 0.51 +1.9 97,535 - Dsui_0097 0.51 -0.9 97,535 - Dsui_0097 0.51 +0.0 97,540 - Dsui_0097 0.52 -0.7 97,576 - Dsui_0097 0.60 +0.9 97,618 + Dsui_0097 0.70 +0.3 97,626 - Dsui_0097 0.72 +1.3 97,687 - +0.9 97,709 - +2.9 97,739 + +0.2 97,744 + +0.1 97,744 + +0.3 97,744 + +0.2 97,744 + -0.1 97,752 - +1.5 98,004 + Dsui_0098 0.85 -0.1 98,066 + +0.9 98,066 + +0.9 98,098 + -1.1 98,106 - Dsui_0099 0.10 -0.2 98,158 - Dsui_0099 0.18 -3.9 98,213 + Dsui_0099 0.27 -0.7 98,243 - Dsui_0099 0.31 -3.1 98,407 + Dsui_0099 0.56 -0.7 98,407 + Dsui_0099 0.56 -0.1 98,530 - Dsui_0099 0.75 -3.3 98,710 + -1.5
Or see this region's nucleotide sequence