Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0085 and Dsui_0086 are separated by 14 nucleotides Dsui_0086 and Dsui_0087 overlap by 4 nucleotides
Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435
_0085
Dsui_0086: Dsui_0086 - nucleoside-diphosphate-sugar epimerase, at 84,450 to 85,421
_0086
Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854
_0087
Position (kb) 84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 83.535 kb on - strand, within Dsui_0085 at 83.577 kb on - strand, within Dsui_0085 at 83.607 kb on - strand, within Dsui_0085 at 83.630 kb on - strand, within Dsui_0085 at 83.654 kb on + strand, within Dsui_0085 at 83.655 kb on - strand, within Dsui_0085 at 83.659 kb on + strand, within Dsui_0085 at 83.659 kb on + strand, within Dsui_0085 at 83.665 kb on - strand, within Dsui_0085 at 83.667 kb on - strand, within Dsui_0085 at 83.747 kb on + strand, within Dsui_0085 at 83.762 kb on + strand, within Dsui_0085 at 83.773 kb on + strand, within Dsui_0085 at 83.795 kb on + strand, within Dsui_0085 at 83.796 kb on - strand, within Dsui_0085 at 83.802 kb on + strand, within Dsui_0085 at 83.804 kb on - strand, within Dsui_0085 at 83.864 kb on - strand, within Dsui_0085 at 83.885 kb on + strand, within Dsui_0085 at 83.893 kb on + strand, within Dsui_0085 at 83.893 kb on + strand, within Dsui_0085 at 83.894 kb on - strand, within Dsui_0085 at 83.895 kb on + strand, within Dsui_0085 at 83.901 kb on - strand, within Dsui_0085 at 83.916 kb on - strand, within Dsui_0085 at 83.939 kb on + strand, within Dsui_0085 at 83.939 kb on + strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.947 kb on - strand, within Dsui_0085 at 83.958 kb on + strand at 83.958 kb on + strand, within Dsui_0085 at 83.964 kb on - strand, within Dsui_0085 at 83.966 kb on - strand, within Dsui_0085 at 84.009 kb on + strand, within Dsui_0085 at 84.024 kb on + strand, within Dsui_0085 at 84.024 kb on + strand, within Dsui_0085 at 84.024 kb on + strand at 84.032 kb on - strand, within Dsui_0085 at 84.032 kb on - strand, within Dsui_0085 at 84.032 kb on - strand, within Dsui_0085 at 84.032 kb on - strand, within Dsui_0085 at 84.032 kb on - strand, within Dsui_0085 at 84.084 kb on + strand, within Dsui_0085 at 84.102 kb on + strand, within Dsui_0085 at 84.108 kb on - strand, within Dsui_0085 at 84.110 kb on - strand, within Dsui_0085 at 84.124 kb on + strand, within Dsui_0085 at 84.145 kb on + strand, within Dsui_0085 at 84.160 kb on + strand, within Dsui_0085 at 84.160 kb on + strand, within Dsui_0085 at 84.168 kb on - strand, within Dsui_0085 at 84.168 kb on - strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.219 kb on + strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.227 kb on - strand, within Dsui_0085 at 84.292 kb on - strand, within Dsui_0085 at 84.293 kb on - strand, within Dsui_0085 at 84.308 kb on + strand, within Dsui_0085 at 84.345 kb on + strand at 84.347 kb on + strand at 84.347 kb on + strand at 84.354 kb on - strand at 84.355 kb on - strand at 84.378 kb on + strand at 84.382 kb on + strand at 84.404 kb on + strand at 84.412 kb on - strand at 84.425 kb on + strand at 84.439 kb on + strand at 84.439 kb on + strand at 84.447 kb on - strand at 84.447 kb on - strand at 84.483 kb on + strand at 84.483 kb on + strand at 84.491 kb on - strand at 84.491 kb on - strand at 84.491 kb on - strand at 84.501 kb on + strand at 84.545 kb on + strand at 84.545 kb on + strand at 84.581 kb on - strand, within Dsui_0086 at 84.690 kb on + strand, within Dsui_0086 at 84.765 kb on - strand, within Dsui_0086 at 84.773 kb on + strand, within Dsui_0086 at 84.804 kb on + strand, within Dsui_0086 at 84.804 kb on + strand, within Dsui_0086 at 84.843 kb on - strand, within Dsui_0086 at 84.858 kb on + strand, within Dsui_0086 at 84.858 kb on + strand, within Dsui_0086 at 84.907 kb on + strand, within Dsui_0086 at 84.959 kb on - strand, within Dsui_0086 at 84.977 kb on + strand, within Dsui_0086 at 84.985 kb on - strand, within Dsui_0086 at 84.985 kb on - strand, within Dsui_0086 at 85.022 kb on + strand, within Dsui_0086 at 85.022 kb on + strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.040 kb on + strand at 85.048 kb on - strand, within Dsui_0086 at 85.073 kb on + strand, within Dsui_0086 at 85.073 kb on + strand, within Dsui_0086 at 85.164 kb on - strand, within Dsui_0086 at 85.187 kb on + strand, within Dsui_0086 at 85.218 kb on - strand, within Dsui_0086 at 85.231 kb on + strand, within Dsui_0086 at 85.326 kb on - strand at 85.422 kb on - strand at 85.442 kb on - strand at 85.488 kb on - strand at 85.538 kb on + strand at 85.566 kb on - strand, within Dsui_0087 at 85.566 kb on - strand, within Dsui_0087 at 85.631 kb on - strand, within Dsui_0087 at 85.734 kb on - strand, within Dsui_0087 at 85.743 kb on - strand, within Dsui_0087 at 85.788 kb on + strand, within Dsui_0087 at 85.796 kb on - strand, within Dsui_0087 at 85.826 kb on - strand, within Dsui_0087 at 85.826 kb on - strand, within Dsui_0087 at 85.833 kb on + strand, within Dsui_0087 at 85.833 kb on + strand, within Dsui_0087 at 85.836 kb on - strand, within Dsui_0087 at 85.841 kb on - strand, within Dsui_0087 at 85.861 kb on + strand, within Dsui_0087 at 85.903 kb on - strand, within Dsui_0087 at 86.184 kb on + strand, within Dsui_0087 at 86.218 kb on + strand, within Dsui_0087 at 86.284 kb on + strand, within Dsui_0087 at 86.292 kb on - strand, within Dsui_0087 at 86.394 kb on - strand, within Dsui_0087
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 83,535 - Dsui_0085 0.17 -3.0 83,577 - Dsui_0085 0.21 -2.2 83,607 - Dsui_0085 0.24 -3.1 83,630 - Dsui_0085 0.26 -2.4 83,654 + Dsui_0085 0.28 -0.1 83,655 - Dsui_0085 0.28 -1.5 83,659 + Dsui_0085 0.29 +0.9 83,659 + Dsui_0085 0.29 -0.7 83,665 - Dsui_0085 0.29 -3.2 83,667 - Dsui_0085 0.30 -3.5 83,747 + Dsui_0085 0.37 -1.5 83,762 + Dsui_0085 0.38 +0.9 83,773 + Dsui_0085 0.39 +0.9 83,795 + Dsui_0085 0.41 -0.1 83,796 - Dsui_0085 0.41 -3.1 83,802 + Dsui_0085 0.42 -0.1 83,804 - Dsui_0085 0.42 -2.9 83,864 - Dsui_0085 0.48 -3.6 83,885 + Dsui_0085 0.50 -0.1 83,893 + Dsui_0085 0.50 -0.1 83,893 + Dsui_0085 0.50 +0.9 83,894 - Dsui_0085 0.50 -3.8 83,895 + Dsui_0085 0.50 +0.9 83,901 - Dsui_0085 0.51 -2.7 83,916 - Dsui_0085 0.52 -3.1 83,939 + Dsui_0085 0.54 +0.9 83,939 + Dsui_0085 0.54 -0.1 83,947 - Dsui_0085 0.55 -3.5 83,947 - Dsui_0085 0.55 -3.0 83,947 - Dsui_0085 0.55 -3.2 83,947 - Dsui_0085 0.55 -2.3 83,947 - Dsui_0085 0.55 -2.9 83,947 - Dsui_0085 0.55 -2.6 83,958 + +0.9 83,958 + Dsui_0085 0.56 +0.9 83,964 - Dsui_0085 0.57 -4.1 83,966 - Dsui_0085 0.57 -4.0 84,009 + Dsui_0085 0.61 -0.7 84,024 + Dsui_0085 0.62 +0.9 84,024 + Dsui_0085 0.62 +0.9 84,024 + +0.9 84,032 - Dsui_0085 0.63 -3.0 84,032 - Dsui_0085 0.63 -3.8 84,032 - Dsui_0085 0.63 -3.1 84,032 - Dsui_0085 0.63 -2.7 84,032 - Dsui_0085 0.63 -2.3 84,084 + Dsui_0085 0.68 +0.9 84,102 + Dsui_0085 0.69 -0.7 84,108 - Dsui_0085 0.70 -2.5 84,110 - Dsui_0085 0.70 -3.5 84,124 + Dsui_0085 0.71 -2.5 84,145 + Dsui_0085 0.73 +0.9 84,160 + Dsui_0085 0.75 +0.9 84,160 + Dsui_0085 0.75 -1.5 84,168 - Dsui_0085 0.75 -3.8 84,168 - Dsui_0085 0.75 -3.6 84,219 + Dsui_0085 0.80 -1.9 84,219 + Dsui_0085 0.80 -0.1 84,219 + Dsui_0085 0.80 -0.1 84,219 + Dsui_0085 0.80 +0.9 84,219 + Dsui_0085 0.80 +0.9 84,219 + Dsui_0085 0.80 -0.1 84,219 + Dsui_0085 0.80 -0.1 84,219 + Dsui_0085 0.80 +0.9 84,227 - Dsui_0085 0.81 +0.0 84,227 - Dsui_0085 0.81 -2.6 84,227 - Dsui_0085 0.81 -3.2 84,227 - Dsui_0085 0.81 -3.1 84,227 - Dsui_0085 0.81 -2.5 84,227 - Dsui_0085 0.81 -3.9 84,292 - Dsui_0085 0.87 -3.3 84,293 - Dsui_0085 0.87 -3.5 84,308 + Dsui_0085 0.88 -0.7 84,345 + +0.9 84,347 + +0.9 84,347 + -1.1 84,354 - -3.6 84,355 - -1.9 84,378 + -0.1 84,382 + +0.9 84,404 + -0.1 84,412 - -4.3 84,425 + +0.9 84,439 + +0.9 84,439 + -0.7 84,447 - -2.9 84,447 - -3.3 84,483 + +0.9 84,483 + +0.9 84,491 - -2.3 84,491 - -3.2 84,491 - -3.7 84,501 + +0.9 84,545 + +0.9 84,545 + +0.9 84,581 - Dsui_0086 0.13 -4.1 84,690 + Dsui_0086 0.25 -0.7 84,765 - Dsui_0086 0.32 -3.1 84,773 + Dsui_0086 0.33 +0.9 84,804 + Dsui_0086 0.36 -0.1 84,804 + Dsui_0086 0.36 -0.1 84,843 - Dsui_0086 0.40 -3.7 84,858 + Dsui_0086 0.42 -0.1 84,858 + Dsui_0086 0.42 +0.9 84,907 + Dsui_0086 0.47 -0.1 84,959 - Dsui_0086 0.52 -1.7 84,977 + Dsui_0086 0.54 -0.1 84,985 - Dsui_0086 0.55 -3.3 84,985 - Dsui_0086 0.55 -3.4 85,022 + Dsui_0086 0.59 +0.9 85,022 + Dsui_0086 0.59 +0.9 85,030 - Dsui_0086 0.60 -3.4 85,030 - Dsui_0086 0.60 -3.9 85,030 - Dsui_0086 0.60 -3.7 85,030 - Dsui_0086 0.60 -1.9 85,030 - Dsui_0086 0.60 -3.7 85,030 - Dsui_0086 0.60 -2.8 85,040 + +0.9 85,048 - Dsui_0086 0.62 -2.3 85,073 + Dsui_0086 0.64 -0.1 85,073 + Dsui_0086 0.64 +0.9 85,164 - Dsui_0086 0.73 -3.0 85,187 + Dsui_0086 0.76 -1.1 85,218 - Dsui_0086 0.79 -2.7 85,231 + Dsui_0086 0.80 +0.9 85,326 - -3.3 85,422 - -0.2 85,442 - -0.7 85,488 - -3.5 85,538 + +0.9 85,566 - Dsui_0087 0.10 -2.4 85,566 - Dsui_0087 0.10 -2.9 85,631 - Dsui_0087 0.15 -3.4 85,734 - Dsui_0087 0.22 -3.3 85,743 - Dsui_0087 0.23 -2.6 85,788 + Dsui_0087 0.26 +0.9 85,796 - Dsui_0087 0.26 -3.9 85,826 - Dsui_0087 0.28 -3.4 85,826 - Dsui_0087 0.28 -2.3 85,833 + Dsui_0087 0.29 -1.7 85,833 + Dsui_0087 0.29 +0.9 85,836 - Dsui_0087 0.29 -2.5 85,841 - Dsui_0087 0.29 -3.2 85,861 + Dsui_0087 0.31 +0.9 85,903 - Dsui_0087 0.34 -2.8 86,184 + Dsui_0087 0.53 +0.9 86,218 + Dsui_0087 0.56 -0.1 86,284 + Dsui_0087 0.60 -0.1 86,292 - Dsui_0087 0.61 -3.3 86,394 - Dsui_0087 0.68 -2.1
Or see this region's nucleotide sequence