Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0059 and Dsui_0060 are separated by 3 nucleotides Dsui_0060 and Dsui_0061 overlap by 4 nucleotides Dsui_0061 and Dsui_0062 are separated by 42 nucleotides Dsui_0062 and Dsui_0063 overlap by 8 nucleotides
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082
_0060
Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182
_0061
Dsui_0062: Dsui_0062 - hypothetical protein, at 59,225 to 59,581
_0062
Dsui_0063: Dsui_0063 - hypothetical protein, at 59,574 to 60,317
_0063
Position (kb) 58
59
60 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 57.106 kb on + strand at 57.119 kb on - strand at 57.132 kb on - strand at 57.137 kb on - strand at 57.139 kb on + strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.183 kb on - strand at 57.275 kb on - strand, within Dsui_0060 at 57.283 kb on - strand, within Dsui_0060 at 57.297 kb on - strand, within Dsui_0060 at 57.331 kb on + strand, within Dsui_0060 at 57.420 kb on + strand, within Dsui_0060 at 57.486 kb on + strand, within Dsui_0060 at 57.539 kb on - strand, within Dsui_0060 at 57.584 kb on + strand, within Dsui_0060 at 57.590 kb on - strand, within Dsui_0060 at 57.592 kb on - strand, within Dsui_0060 at 57.681 kb on + strand, within Dsui_0060 at 57.762 kb on - strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.764 kb on + strand, within Dsui_0060 at 57.772 kb on - strand, within Dsui_0060 at 57.816 kb on + strand, within Dsui_0060 at 57.829 kb on - strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.831 kb on + strand, within Dsui_0060 at 57.838 kb on - strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.863 kb on + strand, within Dsui_0060 at 57.882 kb on + strand, within Dsui_0060 at 57.888 kb on - strand, within Dsui_0060 at 57.903 kb on + strand, within Dsui_0060 at 57.994 kb on + strand at 57.994 kb on + strand at 58.003 kb on + strand at 58.023 kb on - strand at 58.046 kb on - strand at 58.087 kb on + strand at 58.128 kb on + strand at 58.138 kb on + strand at 58.148 kb on + strand at 58.148 kb on + strand at 58.215 kb on + strand, within Dsui_0061 at 58.276 kb on + strand, within Dsui_0061 at 58.320 kb on + strand, within Dsui_0061 at 58.333 kb on - strand, within Dsui_0061 at 58.352 kb on - strand, within Dsui_0061 at 58.359 kb on + strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.421 kb on - strand, within Dsui_0061 at 58.515 kb on - strand, within Dsui_0061 at 58.585 kb on + strand, within Dsui_0061 at 58.632 kb on - strand, within Dsui_0061 at 58.662 kb on - strand, within Dsui_0061 at 58.672 kb on + strand, within Dsui_0061 at 58.674 kb on + strand, within Dsui_0061 at 58.680 kb on + strand, within Dsui_0061 at 58.687 kb on - strand, within Dsui_0061 at 58.688 kb on - strand, within Dsui_0061 at 58.693 kb on - strand, within Dsui_0061 at 58.706 kb on - strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.709 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.773 kb on + strand, within Dsui_0061 at 58.818 kb on - strand, within Dsui_0061 at 58.823 kb on - strand, within Dsui_0061 at 58.843 kb on - strand, within Dsui_0061 at 58.889 kb on + strand, within Dsui_0061 at 58.908 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.914 kb on + strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.922 kb on - strand, within Dsui_0061 at 58.929 kb on + strand, within Dsui_0061 at 58.937 kb on - strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.941 kb on + strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.949 kb on - strand, within Dsui_0061 at 58.958 kb on + strand, within Dsui_0061 at 58.989 kb on + strand, within Dsui_0061 at 58.994 kb on + strand, within Dsui_0061 at 59.025 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.057 kb on - strand, within Dsui_0061 at 59.074 kb on - strand at 59.076 kb on - strand at 59.109 kb on + strand at 59.121 kb on - strand at 59.204 kb on + strand at 59.206 kb on + strand at 59.216 kb on + strand at 59.216 kb on + strand at 59.216 kb on + strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.224 kb on - strand at 59.225 kb on - strand at 59.237 kb on + strand at 59.244 kb on - strand at 59.248 kb on + strand at 59.256 kb on - strand at 59.256 kb on - strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.258 kb on + strand at 59.266 kb on - strand, within Dsui_0062 at 59.266 kb on - strand, within Dsui_0062 at 59.281 kb on + strand, within Dsui_0062 at 59.295 kb on + strand, within Dsui_0062 at 59.298 kb on - strand, within Dsui_0062 at 59.306 kb on + strand, within Dsui_0062 at 59.314 kb on - strand, within Dsui_0062 at 59.377 kb on - strand, within Dsui_0062 at 59.379 kb on - strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.389 kb on + strand, within Dsui_0062 at 59.391 kb on - strand, within Dsui_0062 at 59.393 kb on + strand, within Dsui_0062 at 59.396 kb on - strand, within Dsui_0062 at 59.396 kb on - strand, within Dsui_0062 at 59.397 kb on - strand, within Dsui_0062 at 59.399 kb on + strand, within Dsui_0062 at 59.400 kb on - strand, within Dsui_0062 at 59.402 kb on + strand, within Dsui_0062 at 59.402 kb on + strand, within Dsui_0062 at 59.405 kb on - strand, within Dsui_0062 at 59.405 kb on - strand, within Dsui_0062 at 59.407 kb on - strand, within Dsui_0062 at 59.410 kb on - strand, within Dsui_0062 at 59.410 kb on - strand, within Dsui_0062 at 59.412 kb on - strand, within Dsui_0062 at 59.415 kb on - strand, within Dsui_0062 at 59.418 kb on + strand, within Dsui_0062 at 59.435 kb on + strand, within Dsui_0062 at 59.435 kb on + strand, within Dsui_0062 at 59.436 kb on - strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on + strand, within Dsui_0062 at 59.438 kb on - strand, within Dsui_0062 at 59.443 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.446 kb on - strand, within Dsui_0062 at 59.448 kb on + strand, within Dsui_0062 at 59.448 kb on - strand, within Dsui_0062 at 59.482 kb on - strand, within Dsui_0062 at 59.482 kb on - strand, within Dsui_0062 at 59.507 kb on - strand, within Dsui_0062 at 59.544 kb on - strand, within Dsui_0062 at 59.551 kb on - strand at 59.551 kb on - strand at 59.551 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.556 kb on - strand at 59.589 kb on - strand at 59.596 kb on + strand at 59.601 kb on + strand at 59.604 kb on - strand at 59.604 kb on - strand at 59.606 kb on + strand at 59.609 kb on - strand at 59.609 kb on - strand at 59.627 kb on - strand at 59.632 kb on - strand at 59.693 kb on + strand, within Dsui_0063 at 59.730 kb on + strand, within Dsui_0063 at 59.740 kb on + strand, within Dsui_0063 at 59.753 kb on - strand, within Dsui_0063 at 59.762 kb on - strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.763 kb on + strand, within Dsui_0063 at 59.771 kb on + strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.771 kb on - strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.773 kb on + strand, within Dsui_0063 at 59.776 kb on - strand, within Dsui_0063 at 59.776 kb on - strand, within Dsui_0063 at 59.778 kb on + strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.781 kb on - strand, within Dsui_0063 at 59.795 kb on + strand, within Dsui_0063 at 59.840 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.841 kb on - strand, within Dsui_0063 at 59.848 kb on - strand, within Dsui_0063 at 59.865 kb on - strand, within Dsui_0063 at 59.885 kb on - strand, within Dsui_0063 at 59.918 kb on + strand, within Dsui_0063 at 59.936 kb on - strand, within Dsui_0063 at 59.961 kb on - strand, within Dsui_0063 at 59.963 kb on - strand, within Dsui_0063 at 59.968 kb on - strand, within Dsui_0063 at 59.978 kb on - strand, within Dsui_0063 at 59.998 kb on - strand, within Dsui_0063 at 60.039 kb on + strand, within Dsui_0063 at 60.128 kb on + strand, within Dsui_0063 at 60.129 kb on - strand, within Dsui_0063 at 60.138 kb on + strand, within Dsui_0063 at 60.146 kb on - strand, within Dsui_0063
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 57,106 + -1.5 57,119 - -2.2 57,132 - +0.1 57,137 - -3.6 57,139 + -1.5 57,147 - -0.0 57,147 - +0.5 57,183 - -2.7 57,275 - Dsui_0060 0.17 -4.5 57,283 - Dsui_0060 0.18 -2.5 57,297 - Dsui_0060 0.19 -3.3 57,331 + Dsui_0060 0.23 +0.9 57,420 + Dsui_0060 0.32 -0.1 57,486 + Dsui_0060 0.39 -0.7 57,539 - Dsui_0060 0.44 -3.3 57,584 + Dsui_0060 0.49 -0.1 57,590 - Dsui_0060 0.49 -2.2 57,592 - Dsui_0060 0.50 -3.3 57,681 + Dsui_0060 0.59 -0.7 57,762 - Dsui_0060 0.67 -3.0 57,764 + Dsui_0060 0.67 +0.9 57,764 + Dsui_0060 0.67 -0.1 57,772 - Dsui_0060 0.68 -1.6 57,816 + Dsui_0060 0.73 +0.9 57,829 - Dsui_0060 0.74 -2.7 57,831 + Dsui_0060 0.74 +0.9 57,831 + Dsui_0060 0.74 -1.5 57,838 - Dsui_0060 0.75 -3.3 57,863 + Dsui_0060 0.77 -0.1 57,863 + Dsui_0060 0.77 -0.7 57,882 + Dsui_0060 0.79 -0.1 57,888 - Dsui_0060 0.80 -3.2 57,903 + Dsui_0060 0.82 +0.9 57,994 + +0.9 57,994 + +0.9 58,003 + -1.5 58,023 - -3.6 58,046 - -2.0 58,087 + -0.1 58,128 + -1.1 58,138 + -0.7 58,148 + -1.1 58,148 + +0.9 58,215 + Dsui_0061 0.12 +0.9 58,276 + Dsui_0061 0.18 -1.1 58,320 + Dsui_0061 0.22 -1.7 58,333 - Dsui_0061 0.23 -3.6 58,352 - Dsui_0061 0.25 -3.1 58,359 + Dsui_0061 0.25 +0.9 58,421 - Dsui_0061 0.31 -3.4 58,421 - Dsui_0061 0.31 -3.3 58,515 - Dsui_0061 0.39 -3.0 58,585 + Dsui_0061 0.46 -0.7 58,632 - Dsui_0061 0.50 -1.9 58,662 - Dsui_0061 0.53 -2.5 58,672 + Dsui_0061 0.54 -1.5 58,674 + Dsui_0061 0.54 -1.7 58,680 + Dsui_0061 0.54 -0.7 58,687 - Dsui_0061 0.55 -3.5 58,688 - Dsui_0061 0.55 -2.9 58,693 - Dsui_0061 0.56 -5.2 58,706 - Dsui_0061 0.57 -3.3 58,709 + Dsui_0061 0.57 -0.7 58,709 + Dsui_0061 0.57 -1.5 58,773 + Dsui_0061 0.63 +0.9 58,773 + Dsui_0061 0.63 -0.1 58,818 - Dsui_0061 0.67 -3.5 58,823 - Dsui_0061 0.67 -3.3 58,843 - Dsui_0061 0.69 -3.3 58,889 + Dsui_0061 0.73 +0.9 58,908 + Dsui_0061 0.75 -0.1 58,914 + Dsui_0061 0.76 +0.9 58,914 + Dsui_0061 0.76 +1.9 58,922 - Dsui_0061 0.76 -3.5 58,922 - Dsui_0061 0.76 -2.1 58,922 - Dsui_0061 0.76 -3.2 58,929 + Dsui_0061 0.77 +0.9 58,937 - Dsui_0061 0.78 -2.9 58,941 + Dsui_0061 0.78 -3.5 58,941 + Dsui_0061 0.78 +0.9 58,949 - Dsui_0061 0.79 -3.9 58,949 - Dsui_0061 0.79 -3.1 58,958 + Dsui_0061 0.80 +0.9 58,989 + Dsui_0061 0.82 -0.7 58,994 + Dsui_0061 0.83 +0.9 59,025 - Dsui_0061 0.86 -2.8 59,057 - Dsui_0061 0.89 -3.2 59,057 - Dsui_0061 0.89 -3.0 59,074 - -4.1 59,076 - -3.5 59,109 + -2.3 59,121 - -3.3 59,204 + -1.9 59,206 + -1.1 59,216 + -0.1 59,216 + -0.1 59,216 + +0.9 59,224 - +0.1 59,224 - -0.0 59,224 - +0.5 59,224 - +0.1 59,224 - +0.5 59,224 - +0.1 59,224 - +0.5 59,224 - +0.2 59,224 - -0.3 59,224 - -0.1 59,224 - -0.3 59,224 - +0.2 59,225 - -0.2 59,237 + +1.9 59,244 - +0.1 59,248 + +0.9 59,256 - -0.0 59,256 - -0.1 59,258 + -1.5 59,258 + -0.1 59,258 + +0.9 59,258 + +0.9 59,266 - Dsui_0062 0.11 +0.7 59,266 - Dsui_0062 0.11 -0.1 59,281 + Dsui_0062 0.16 -0.1 59,295 + Dsui_0062 0.20 +0.9 59,298 - Dsui_0062 0.20 +0.4 59,306 + Dsui_0062 0.23 -2.5 59,314 - Dsui_0062 0.25 +0.2 59,377 - Dsui_0062 0.43 +0.1 59,379 - Dsui_0062 0.43 -0.2 59,389 + Dsui_0062 0.46 +0.9 59,389 + Dsui_0062 0.46 -0.7 59,389 + Dsui_0062 0.46 -0.1 59,389 + Dsui_0062 0.46 +0.9 59,389 + Dsui_0062 0.46 +0.9 59,391 - Dsui_0062 0.46 +0.7 59,393 + Dsui_0062 0.47 +0.9 59,396 - Dsui_0062 0.48 +0.2 59,396 - Dsui_0062 0.48 +0.4 59,397 - Dsui_0062 0.48 +0.8 59,399 + Dsui_0062 0.49 +0.9 59,400 - Dsui_0062 0.49 +0.1 59,402 + Dsui_0062 0.50 -0.1 59,402 + Dsui_0062 0.50 -0.1 59,405 - Dsui_0062 0.50 +0.1 59,405 - Dsui_0062 0.50 -0.1 59,407 - Dsui_0062 0.51 +0.5 59,410 - Dsui_0062 0.52 -0.3 59,410 - Dsui_0062 0.52 +0.7 59,412 - Dsui_0062 0.52 +0.5 59,415 - Dsui_0062 0.53 +0.0 59,418 + Dsui_0062 0.54 -0.1 59,435 + Dsui_0062 0.59 +0.9 59,435 + Dsui_0062 0.59 -0.7 59,436 - Dsui_0062 0.59 +0.6 59,438 + Dsui_0062 0.60 -0.7 59,438 + Dsui_0062 0.60 +0.9 59,438 + Dsui_0062 0.60 +0.9 59,438 + Dsui_0062 0.60 -0.7 59,438 - Dsui_0062 0.60 +0.4 59,443 - Dsui_0062 0.61 +0.3 59,446 - Dsui_0062 0.62 -0.1 59,446 - Dsui_0062 0.62 +0.6 59,446 - Dsui_0062 0.62 +0.9 59,446 - Dsui_0062 0.62 +0.7 59,446 - Dsui_0062 0.62 +0.1 59,446 - Dsui_0062 0.62 -0.2 59,446 - Dsui_0062 0.62 +0.1 59,446 - Dsui_0062 0.62 +1.1 59,448 + Dsui_0062 0.62 +0.9 59,448 - Dsui_0062 0.62 +0.6 59,482 - Dsui_0062 0.72 +0.9 59,482 - Dsui_0062 0.72 -1.6 59,507 - Dsui_0062 0.79 +0.5 59,544 - Dsui_0062 0.89 +0.2 59,551 - -0.2 59,551 - -0.1 59,551 - +0.3 59,556 - -0.1 59,556 - +0.2 59,556 - -0.1 59,556 - +0.6 59,589 - -0.3 59,596 + -1.7 59,601 + -1.1 59,604 - +0.1 59,604 - +0.1 59,606 + -1.1 59,609 - +1.3 59,609 - -0.1 59,627 - +0.6 59,632 - +0.0 59,693 + Dsui_0063 0.16 -0.1 59,730 + Dsui_0063 0.21 -0.1 59,740 + Dsui_0063 0.22 +0.9 59,753 - Dsui_0063 0.24 +1.0 59,762 - Dsui_0063 0.25 +0.3 59,763 + Dsui_0063 0.25 -0.1 59,763 + Dsui_0063 0.25 +0.9 59,763 + Dsui_0063 0.25 +0.9 59,771 + Dsui_0063 0.26 -1.9 59,771 - Dsui_0063 0.26 +0.2 59,771 - Dsui_0063 0.26 +0.5 59,771 - Dsui_0063 0.26 +0.2 59,771 - Dsui_0063 0.26 +0.3 59,773 + Dsui_0063 0.27 -0.1 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 -0.1 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 -0.1 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 -1.5 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 +0.9 59,773 + Dsui_0063 0.27 +0.9 59,776 - Dsui_0063 0.27 -0.0 59,776 - Dsui_0063 0.27 +0.0 59,778 + Dsui_0063 0.27 -0.1 59,781 - Dsui_0063 0.28 -0.2 59,781 - Dsui_0063 0.28 +0.1 59,781 - Dsui_0063 0.28 -0.1 59,781 - Dsui_0063 0.28 +0.1 59,781 - Dsui_0063 0.28 +0.0 59,781 - Dsui_0063 0.28 +1.9 59,781 - Dsui_0063 0.28 -0.2 59,781 - Dsui_0063 0.28 +0.3 59,781 - Dsui_0063 0.28 -0.1 59,781 - Dsui_0063 0.28 -0.3 59,795 + Dsui_0063 0.30 +0.9 59,840 - Dsui_0063 0.36 -0.0 59,841 - Dsui_0063 0.36 -0.5 59,841 - Dsui_0063 0.36 +0.1 59,841 - Dsui_0063 0.36 -0.1 59,841 - Dsui_0063 0.36 +0.1 59,848 - Dsui_0063 0.37 -0.2 59,865 - Dsui_0063 0.39 +0.6 59,885 - Dsui_0063 0.42 +0.2 59,918 + Dsui_0063 0.46 +0.9 59,936 - Dsui_0063 0.49 +0.4 59,961 - Dsui_0063 0.52 -0.1 59,963 - Dsui_0063 0.52 +0.2 59,968 - Dsui_0063 0.53 +0.2 59,978 - Dsui_0063 0.54 -0.6 59,998 - Dsui_0063 0.57 -0.2 60,039 + Dsui_0063 0.62 -1.1 60,128 + Dsui_0063 0.74 +0.9 60,129 - Dsui_0063 0.75 +0.4 60,138 + Dsui_0063 0.76 +1.9 60,146 - Dsui_0063 0.77 -0.5
Or see this region's nucleotide sequence