Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0055 and Dsui_0056 overlap by 14 nucleotides Dsui_0056 and Dsui_0057 overlap by 4 nucleotides Dsui_0057 and Dsui_0058 are separated by 7 nucleotides Dsui_0058 and Dsui_0059 overlap by 62 nucleotides
Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385
_0055
Dsui_0056: Dsui_0056 - glycosyl transferase, at 53,372 to 54,301
_0056
Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488
_0057
Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431
_0058
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Position (kb) 54
55
56 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 53.499 kb on - strand, within Dsui_0056 at 53.557 kb on - strand, within Dsui_0056 at 53.593 kb on - strand, within Dsui_0056 at 53.637 kb on - strand, within Dsui_0056 at 53.650 kb on + strand at 53.712 kb on - strand, within Dsui_0056 at 53.770 kb on - strand, within Dsui_0056 at 53.790 kb on + strand, within Dsui_0056 at 53.829 kb on + strand, within Dsui_0056 at 53.952 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.279 kb on + strand at 54.340 kb on - strand at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.457 kb on - strand, within Dsui_0057 at 54.557 kb on + strand, within Dsui_0057 at 54.585 kb on + strand, within Dsui_0057 at 54.845 kb on - strand, within Dsui_0057 at 54.848 kb on - strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.881 kb on - strand, within Dsui_0057 at 54.910 kb on - strand, within Dsui_0057 at 54.961 kb on - strand, within Dsui_0057 at 55.089 kb on - strand, within Dsui_0057 at 55.227 kb on + strand, within Dsui_0057 at 55.235 kb on - strand, within Dsui_0057 at 55.262 kb on - strand, within Dsui_0057 at 55.384 kb on - strand at 55.394 kb on - strand at 55.397 kb on + strand at 55.405 kb on - strand at 55.438 kb on - strand at 55.455 kb on - strand at 55.455 kb on - strand at 55.461 kb on + strand at 55.483 kb on + strand at 55.702 kb on + strand, within Dsui_0058 at 55.727 kb on + strand, within Dsui_0058 at 55.784 kb on + strand, within Dsui_0058 at 55.792 kb on - strand, within Dsui_0058 at 55.833 kb on + strand, within Dsui_0058 at 55.856 kb on + strand, within Dsui_0058 at 55.897 kb on - strand, within Dsui_0058 at 55.935 kb on + strand, within Dsui_0058 at 55.947 kb on - strand, within Dsui_0058 at 55.964 kb on - strand, within Dsui_0058 at 56.149 kb on - strand, within Dsui_0058 at 56.159 kb on + strand, within Dsui_0058 at 56.193 kb on - strand, within Dsui_0058 at 56.250 kb on - strand, within Dsui_0058 at 56.367 kb on + strand at 56.386 kb on - strand at 56.391 kb on + strand at 56.426 kb on - strand at 56.464 kb on + strand, within Dsui_0059
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 53,499 - Dsui_0056 0.14 -2.3 53,557 - Dsui_0056 0.20 -1.6 53,593 - Dsui_0056 0.24 -1.6 53,637 - Dsui_0056 0.28 -4.8 53,650 + -0.1 53,712 - Dsui_0056 0.37 -2.6 53,770 - Dsui_0056 0.43 -2.5 53,790 + Dsui_0056 0.45 +0.9 53,829 + Dsui_0056 0.49 -0.1 53,952 - Dsui_0056 0.62 -3.6 54,093 - Dsui_0056 0.78 -1.4 54,093 - Dsui_0056 0.78 -4.4 54,279 + -0.1 54,340 - +0.2 54,430 + Dsui_0057 0.11 +0.9 54,430 + Dsui_0057 0.11 +0.9 54,430 + Dsui_0057 0.11 -1.1 54,457 - Dsui_0057 0.13 -3.5 54,557 + Dsui_0057 0.22 -0.7 54,585 + Dsui_0057 0.24 -1.1 54,845 - Dsui_0057 0.46 -3.2 54,848 - Dsui_0057 0.46 -3.4 54,873 + Dsui_0057 0.48 -0.1 54,873 + Dsui_0057 0.48 -0.7 54,881 - Dsui_0057 0.49 -1.2 54,910 - Dsui_0057 0.51 -1.4 54,961 - Dsui_0057 0.56 -3.8 55,089 - Dsui_0057 0.66 -3.4 55,227 + Dsui_0057 0.78 -0.1 55,235 - Dsui_0057 0.79 -3.4 55,262 - Dsui_0057 0.81 -3.5 55,384 - -2.7 55,394 - -2.1 55,397 + -1.5 55,405 - -2.4 55,438 - -3.4 55,455 - -1.8 55,455 - -1.9 55,461 + +0.9 55,483 + +0.9 55,702 + Dsui_0058 0.22 +0.9 55,727 + Dsui_0058 0.25 -4.0 55,784 + Dsui_0058 0.31 -1.1 55,792 - Dsui_0058 0.32 -2.5 55,833 + Dsui_0058 0.36 +0.9 55,856 + Dsui_0058 0.38 -0.1 55,897 - Dsui_0058 0.43 -2.7 55,935 + Dsui_0058 0.47 -0.1 55,947 - Dsui_0058 0.48 -2.0 55,964 - Dsui_0058 0.50 -1.6 56,149 - Dsui_0058 0.70 -2.3 56,159 + Dsui_0058 0.71 -0.1 56,193 - Dsui_0058 0.74 -2.5 56,250 - Dsui_0058 0.81 -3.6 56,367 + -0.7 56,386 - -0.6 56,391 + +0.9 56,426 - -2.9 56,464 + Dsui_0059 0.13 +0.9
Or see this region's nucleotide sequence