Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0037 and Dsui_0038 are separated by 85 nucleotides Dsui_0038 and Dsui_0039 are separated by 102 nucleotides Dsui_0039 and Dsui_0040 are separated by 185 nucleotides
Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840
_0037
Dsui_0038: Dsui_0038 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 34,926 to 35,336
_0038
Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215
_0039
Dsui_0040: Dsui_0040 - FAD-dependent dehydrogenase, at 36,401 to 38,029
_0040
Position (kb) 35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 34.461 kb on - strand, within Dsui_0037 at 34.476 kb on - strand, within Dsui_0037 at 34.482 kb on - strand, within Dsui_0037 at 34.611 kb on + strand at 34.721 kb on - strand at 34.761 kb on - strand at 34.810 kb on - strand at 34.860 kb on - strand at 34.876 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.890 kb on + strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.898 kb on - strand at 34.923 kb on + strand at 34.923 kb on + strand at 34.931 kb on - strand at 34.972 kb on + strand, within Dsui_0038 at 34.972 kb on + strand, within Dsui_0038 at 35.019 kb on + strand, within Dsui_0038 at 35.027 kb on - strand at 35.139 kb on + strand, within Dsui_0038 at 35.149 kb on + strand, within Dsui_0038 at 35.155 kb on + strand, within Dsui_0038 at 35.259 kb on + strand, within Dsui_0038 at 35.413 kb on - strand at 35.466 kb on + strand at 35.554 kb on + strand, within Dsui_0039 at 35.714 kb on + strand, within Dsui_0039 at 35.794 kb on + strand, within Dsui_0039 at 35.802 kb on + strand, within Dsui_0039 at 35.971 kb on + strand, within Dsui_0039 at 36.088 kb on + strand, within Dsui_0039 at 36.096 kb on - strand at 36.186 kb on + strand at 36.193 kb on - strand at 36.354 kb on + strand at 36.377 kb on + strand at 36.385 kb on - strand at 36.391 kb on + strand at 36.427 kb on + strand at 36.436 kb on - strand at 36.436 kb on - strand at 36.449 kb on + strand at 36.449 kb on + strand at 36.457 kb on - strand at 36.486 kb on - strand at 36.502 kb on + strand at 36.510 kb on - strand at 36.525 kb on + strand at 36.533 kb on - strand at 36.533 kb on - strand at 36.693 kb on + strand, within Dsui_0040 at 36.708 kb on + strand, within Dsui_0040 at 36.754 kb on - strand, within Dsui_0040 at 36.789 kb on - strand, within Dsui_0040 at 36.808 kb on + strand, within Dsui_0040 at 36.821 kb on - strand, within Dsui_0040 at 36.826 kb on + strand, within Dsui_0040 at 36.826 kb on - strand, within Dsui_0040 at 36.921 kb on - strand, within Dsui_0040 at 37.014 kb on + strand, within Dsui_0040 at 37.048 kb on + strand, within Dsui_0040 at 37.048 kb on + strand, within Dsui_0040 at 37.056 kb on - strand, within Dsui_0040 at 37.133 kb on + strand, within Dsui_0040 at 37.195 kb on + strand, within Dsui_0040
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 34,461 - Dsui_0037 0.69 +0.9 34,476 - Dsui_0037 0.70 -0.1 34,482 - Dsui_0037 0.70 +0.2 34,611 + +0.9 34,721 - +0.9 34,761 - +0.9 34,810 - -0.1 34,860 - -1.7 34,876 + -1.7 34,890 + -0.1 34,890 + -0.7 34,890 + +0.9 34,890 + +0.9 34,898 - +0.9 34,898 - +0.9 34,898 - +0.9 34,898 - -0.1 34,898 - -0.1 34,898 - +0.9 34,923 + +0.3 34,923 + -0.4 34,931 - +0.9 34,972 + Dsui_0038 0.11 -0.5 34,972 + Dsui_0038 0.11 -0.3 35,019 + Dsui_0038 0.23 -0.5 35,027 - +0.9 35,139 + Dsui_0038 0.52 -0.4 35,149 + Dsui_0038 0.54 -0.1 35,155 + Dsui_0038 0.56 -0.3 35,259 + Dsui_0038 0.81 +0.3 35,413 - -0.1 35,466 + -3.7 35,554 + Dsui_0039 0.15 -0.9 35,714 + Dsui_0039 0.35 -3.8 35,794 + Dsui_0039 0.46 -2.3 35,802 + Dsui_0039 0.47 -3.0 35,971 + Dsui_0039 0.68 -3.5 36,088 + Dsui_0039 0.84 -1.0 36,096 - -1.1 36,186 + -0.6 36,193 - +0.9 36,354 + -0.1 36,377 + -0.5 36,385 - -1.1 36,391 + +0.2 36,427 + -0.1 36,436 - -0.1 36,436 - -1.9 36,449 + -0.3 36,449 + -0.3 36,457 - +0.9 36,486 - +0.9 36,502 + -0.3 36,510 - -2.1 36,525 + -0.1 36,533 - -0.7 36,533 - -1.5 36,693 + Dsui_0040 0.18 -0.3 36,708 + Dsui_0040 0.19 +0.3 36,754 - Dsui_0040 0.22 +0.9 36,789 - Dsui_0040 0.24 +0.9 36,808 + Dsui_0040 0.25 -0.7 36,821 - Dsui_0040 0.26 -0.1 36,826 + Dsui_0040 0.26 +0.1 36,826 - Dsui_0040 0.26 +0.9 36,921 - Dsui_0040 0.32 -0.1 37,014 + Dsui_0040 0.38 +0.4 37,048 + Dsui_0040 0.40 -0.5 37,048 + Dsui_0040 0.40 -0.3 37,056 - Dsui_0040 0.40 -0.1 37,133 + Dsui_0040 0.45 -0.2 37,195 + Dsui_0040 0.49 -0.2
Or see this region's nucleotide sequence