Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0023 and Dsui_0024 are separated by 153 nucleotides Dsui_0024 and Dsui_0025 are separated by 250 nucleotides Dsui_0025 and Dsui_0026 are separated by 129 nucleotides
Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777
_0023
Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377
_0024
Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710
_0025
Dsui_0026: Dsui_0026 - CBS domain-containing protein, at 23,840 to 25,126
_0026
Position (kb)
22
23
24 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 21.779 kb on - strand at 21.779 kb on - strand at 21.783 kb on + strand at 21.795 kb on - strand at 21.859 kb on - strand at 21.900 kb on + strand at 22.049 kb on - strand at 22.062 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.220 kb on - strand, within Dsui_0024 at 22.220 kb on - strand at 22.221 kb on - strand at 22.223 kb on + strand, within Dsui_0024 at 22.364 kb on - strand at 22.390 kb on + strand at 22.410 kb on + strand at 22.468 kb on - strand at 22.655 kb on + strand at 22.751 kb on + strand at 22.789 kb on - strand at 22.825 kb on + strand at 22.882 kb on - strand at 22.992 kb on + strand, within Dsui_0025 at 23.197 kb on + strand at 23.322 kb on + strand, within Dsui_0025 at 23.381 kb on + strand, within Dsui_0025 at 23.577 kb on - strand, within Dsui_0025 at 23.589 kb on - strand at 23.753 kb on - strand at 23.787 kb on - strand at 23.807 kb on - strand at 23.825 kb on - strand at 23.858 kb on + strand at 23.892 kb on - strand at 23.965 kb on + strand at 24.096 kb on + strand, within Dsui_0026 at 24.136 kb on + strand, within Dsui_0026 at 24.200 kb on - strand, within Dsui_0026 at 24.204 kb on - strand at 24.215 kb on - strand at 24.230 kb on - strand, within Dsui_0026 at 24.264 kb on - strand, within Dsui_0026 at 24.344 kb on + strand, within Dsui_0026 at 24.364 kb on - strand, within Dsui_0026 at 24.364 kb on - strand, within Dsui_0026 at 24.378 kb on + strand, within Dsui_0026 at 24.386 kb on - strand, within Dsui_0026 at 24.455 kb on - strand at 24.556 kb on + strand at 24.556 kb on - strand at 24.566 kb on - strand, within Dsui_0026 at 24.615 kb on + strand, within Dsui_0026 at 24.637 kb on + strand, within Dsui_0026 at 24.686 kb on + strand at 24.706 kb on + strand, within Dsui_0026
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 21,779 - -0.7 21,779 - +0.9 21,783 + -0.1 21,795 - -1.1 21,859 - +0.9 21,900 + -0.9 22,049 - -0.1 22,062 + Dsui_0024 0.29 +3.6 22,212 + Dsui_0024 0.63 +3.4 22,212 + Dsui_0024 0.63 +2.8 22,212 + Dsui_0024 0.63 +3.6 22,220 - Dsui_0024 0.65 -0.7 22,220 - -0.1 22,221 - +0.9 22,223 + Dsui_0024 0.65 +3.5 22,364 - -0.7 22,390 + -0.9 22,410 + +0.1 22,468 - -1.1 22,655 + -0.1 22,751 + +0.9 22,789 - -0.1 22,825 + +0.9 22,882 - +0.9 22,992 + Dsui_0025 0.34 -1.9 23,197 + -0.1 23,322 + Dsui_0025 0.64 -3.0 23,381 + Dsui_0025 0.70 -2.1 23,577 - Dsui_0025 0.88 -0.7 23,589 - +0.9 23,753 - -2.6 23,787 - -1.1 23,807 - -0.1 23,825 - -1.7 23,858 + +0.9 23,892 - -0.7 23,965 + +0.9 24,096 + Dsui_0026 0.20 -0.7 24,136 + Dsui_0026 0.23 -0.1 24,200 - Dsui_0026 0.28 -3.9 24,204 - +0.9 24,215 - +0.9 24,230 - Dsui_0026 0.30 -1.9 24,264 - Dsui_0026 0.33 -1.1 24,344 + Dsui_0026 0.39 -1.1 24,364 - Dsui_0026 0.41 -0.7 24,364 - Dsui_0026 0.41 +0.9 24,378 + Dsui_0026 0.42 +0.9 24,386 - Dsui_0026 0.42 +0.9 24,455 - +0.9 24,556 + +0.9 24,556 - +0.9 24,566 - Dsui_0026 0.56 -0.7 24,615 + Dsui_0026 0.60 -0.1 24,637 + Dsui_0026 0.62 -0.1 24,686 + -0.1 24,706 + Dsui_0026 0.67 +0.9
Or see this region's nucleotide sequence