Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0023 and Dsui_0024 are separated by 153 nucleotides Dsui_0024 and Dsui_0025 are separated by 250 nucleotides
Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777
_0023
Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377
_0024
Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710
_0025
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 20.974 kb on + strand, within Dsui_0023 at 21.010 kb on - strand, within Dsui_0023 at 21.079 kb on + strand at 21.181 kb on - strand at 21.186 kb on - strand at 21.221 kb on + strand at 21.227 kb on + strand, within Dsui_0023 at 21.286 kb on - strand, within Dsui_0023 at 21.360 kb on + strand at 21.584 kb on - strand at 21.779 kb on - strand at 21.779 kb on - strand at 21.783 kb on + strand at 21.795 kb on - strand at 21.859 kb on - strand at 21.900 kb on + strand at 22.049 kb on - strand at 22.062 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.220 kb on - strand, within Dsui_0024 at 22.220 kb on - strand at 22.221 kb on - strand at 22.223 kb on + strand, within Dsui_0024 at 22.364 kb on - strand at 22.390 kb on + strand at 22.410 kb on + strand at 22.468 kb on - strand at 22.655 kb on + strand at 22.751 kb on + strand at 22.789 kb on - strand at 22.825 kb on + strand at 22.882 kb on - strand at 22.992 kb on + strand, within Dsui_0025 at 23.197 kb on + strand at 23.322 kb on + strand, within Dsui_0025
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 20,974 + Dsui_0023 0.32 -2.5 21,010 - Dsui_0023 0.36 -1.8 21,079 + +0.9 21,181 - +0.9 21,186 - +0.9 21,221 + +0.9 21,227 + Dsui_0023 0.54 -0.7 21,286 - Dsui_0023 0.59 -1.5 21,360 + +0.9 21,584 - +0.9 21,779 - -0.7 21,779 - +0.9 21,783 + -0.1 21,795 - -1.1 21,859 - +0.9 21,900 + -0.9 22,049 - -0.1 22,062 + Dsui_0024 0.29 +3.6 22,212 + Dsui_0024 0.63 +3.4 22,212 + Dsui_0024 0.63 +2.8 22,212 + Dsui_0024 0.63 +3.6 22,220 - Dsui_0024 0.65 -0.7 22,220 - -0.1 22,221 - +0.9 22,223 + Dsui_0024 0.65 +3.5 22,364 - -0.7 22,390 + -0.9 22,410 + +0.1 22,468 - -1.1 22,655 + -0.1 22,751 + +0.9 22,789 - -0.1 22,825 + +0.9 22,882 - +0.9 22,992 + Dsui_0025 0.34 -1.9 23,197 + -0.1 23,322 + Dsui_0025 0.64 -3.0
Or see this region's nucleotide sequence