Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26130

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26125 and BWI76_RS26130 are separated by 44 nucleotidesBWI76_RS26130 and BWI76_RS26135 are separated by 331 nucleotides BWI76_RS26125: BWI76_RS26125 - carboxypeptidase/penicillin-binding protein 1A, at 5,395,533 to 5,398,091 _RS26125 BWI76_RS26130: BWI76_RS26130 - ADP compounds hydrolase NudE, at 5,398,136 to 5,398,696 _RS26130 BWI76_RS26135: BWI76_RS26135 - Intracellular growth attenuator protein igaA, at 5,399,028 to 5,401,157 _RS26135 Position (kb) 5398 5399Strain fitness (log2 ratio) -3 -2 -1 0 1at 5397.181 kb on + strand, within BWI76_RS26125at 5397.488 kb on + strand, within BWI76_RS26125at 5397.567 kb on + strand, within BWI76_RS26125at 5397.690 kb on + strand, within BWI76_RS26125at 5397.887 kb on + strandat 5398.484 kb on - strand, within BWI76_RS26130at 5398.513 kb on + strand, within BWI76_RS26130at 5398.609 kb on - strand, within BWI76_RS26130at 5398.744 kb on + strandat 5398.891 kb on + strandat 5398.899 kb on - strandat 5398.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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5,397,181 + BWI76_RS26125 0.64 -0.1
5,397,488 + BWI76_RS26125 0.76 +0.7
5,397,567 + BWI76_RS26125 0.79 +1.2
5,397,690 + BWI76_RS26125 0.84 -0.5
5,397,887 + +0.5
5,398,484 - BWI76_RS26130 0.62 -3.7
5,398,513 + BWI76_RS26130 0.67 -3.4
5,398,609 - BWI76_RS26130 0.84 -0.7
5,398,744 + -0.4
5,398,891 + +1.5
5,398,899 - +0.4
5,398,899 - -0.4

Or see this region's nucleotide sequence