Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23370 and BWI76_RS23375 are separated by 135 nucleotides BWI76_RS23375 and BWI76_RS23380 are separated by 493 nucleotides BWI76_RS23380 and BWI76_RS23385 overlap by 8 nucleotides BWI76_RS23385 and BWI76_RS23390 are separated by 12 nucleotides
BWI76_RS23370: BWI76_RS23370 - aspartate/glutamate racemase, at 4,873,650 to 4,874,342
_RS23370
BWI76_RS23375: BWI76_RS23375 - cupin, at 4,874,478 to 4,874,804
_RS23375
BWI76_RS23380: BWI76_RS23380 - sugar ABC transporter permease, at 4,875,298 to 4,876,188
_RS23380
BWI76_RS23385: BWI76_RS23385 - sugar ABC transporter permease, at 4,876,181 to 4,877,083
_RS23385
BWI76_RS23390: BWI76_RS23390 - oligogalacturonide ABC transporter ATP-binding protein, at 4,877,096 to 4,878,223
_RS23390
Position (kb) 4875
4876
4877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4874.311 kb on - strand at 4874.519 kb on - strand, within BWI76_RS23375 at 4874.519 kb on - strand, within BWI76_RS23375 at 4874.578 kb on + strand, within BWI76_RS23375 at 4874.627 kb on + strand, within BWI76_RS23375 at 4874.627 kb on + strand, within BWI76_RS23375 at 4874.632 kb on + strand, within BWI76_RS23375 at 4874.632 kb on + strand, within BWI76_RS23375 at 4874.640 kb on - strand, within BWI76_RS23375 at 4874.821 kb on - strand at 4874.821 kb on - strand at 4874.941 kb on + strand at 4874.950 kb on - strand at 4874.961 kb on + strand at 4874.961 kb on + strand at 4874.961 kb on + strand at 4874.969 kb on - strand at 4874.969 kb on - strand at 4874.969 kb on - strand at 4875.256 kb on + strand at 4875.287 kb on + strand at 4875.404 kb on - strand, within BWI76_RS23380 at 4875.430 kb on - strand, within BWI76_RS23380 at 4875.430 kb on - strand, within BWI76_RS23380 at 4875.457 kb on - strand, within BWI76_RS23380 at 4875.497 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.580 kb on - strand, within BWI76_RS23380 at 4875.702 kb on - strand, within BWI76_RS23380 at 4875.721 kb on - strand, within BWI76_RS23380 at 4875.739 kb on - strand, within BWI76_RS23380 at 4875.769 kb on - strand, within BWI76_RS23380 at 4876.020 kb on + strand, within BWI76_RS23380 at 4876.047 kb on - strand at 4876.086 kb on - strand, within BWI76_RS23380 at 4876.086 kb on - strand, within BWI76_RS23380 at 4876.233 kb on - strand at 4876.310 kb on - strand, within BWI76_RS23385 at 4876.322 kb on + strand, within BWI76_RS23385 at 4876.371 kb on + strand, within BWI76_RS23385 at 4876.444 kb on - strand, within BWI76_RS23385 at 4876.610 kb on - strand, within BWI76_RS23385 at 4876.613 kb on - strand, within BWI76_RS23385 at 4876.694 kb on + strand, within BWI76_RS23385 at 4876.798 kb on + strand, within BWI76_RS23385 at 4877.043 kb on + strand at 4877.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 4,874,311 - +0.6 4,874,519 - BWI76_RS23375 0.13 +1.0 4,874,519 - BWI76_RS23375 0.13 +1.5 4,874,578 + BWI76_RS23375 0.31 +0.2 4,874,627 + BWI76_RS23375 0.46 +0.6 4,874,627 + BWI76_RS23375 0.46 +0.4 4,874,632 + BWI76_RS23375 0.47 -1.6 4,874,632 + BWI76_RS23375 0.47 +0.9 4,874,640 - BWI76_RS23375 0.50 -2.0 4,874,821 - +0.6 4,874,821 - +0.4 4,874,941 + +1.2 4,874,950 - -0.2 4,874,961 + +0.2 4,874,961 + -1.3 4,874,961 + +0.7 4,874,969 - -0.5 4,874,969 - -0.2 4,874,969 - +1.1 4,875,256 + -1.3 4,875,287 + +0.1 4,875,404 - BWI76_RS23380 0.12 +0.6 4,875,430 - BWI76_RS23380 0.15 -3.7 4,875,430 - BWI76_RS23380 0.15 -0.3 4,875,457 - BWI76_RS23380 0.18 +0.4 4,875,497 - BWI76_RS23380 0.22 -0.1 4,875,580 - BWI76_RS23380 0.32 +1.3 4,875,580 - BWI76_RS23380 0.32 -0.4 4,875,580 - BWI76_RS23380 0.32 +1.1 4,875,580 - BWI76_RS23380 0.32 -0.4 4,875,580 - BWI76_RS23380 0.32 +2.1 4,875,580 - BWI76_RS23380 0.32 +0.8 4,875,580 - BWI76_RS23380 0.32 +0.5 4,875,702 - BWI76_RS23380 0.45 +0.4 4,875,721 - BWI76_RS23380 0.47 -0.1 4,875,739 - BWI76_RS23380 0.49 +1.8 4,875,769 - BWI76_RS23380 0.53 +1.1 4,876,020 + BWI76_RS23380 0.81 -1.3 4,876,047 - -0.5 4,876,086 - BWI76_RS23380 0.88 +0.6 4,876,086 - BWI76_RS23380 0.88 +0.4 4,876,233 - +0.8 4,876,310 - BWI76_RS23385 0.14 +0.6 4,876,322 + BWI76_RS23385 0.16 -1.4 4,876,371 + BWI76_RS23385 0.21 +0.6 4,876,444 - BWI76_RS23385 0.29 +0.2 4,876,610 - BWI76_RS23385 0.48 -1.4 4,876,613 - BWI76_RS23385 0.48 -0.6 4,876,694 + BWI76_RS23385 0.57 -0.1 4,876,798 + BWI76_RS23385 0.68 -0.1 4,877,043 + +1.4 4,877,168 - -0.1
Or see this region's nucleotide sequence