Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21390

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21385 and BWI76_RS21390 are separated by 203 nucleotidesBWI76_RS21390 and BWI76_RS21395 are separated by 69 nucleotidesBWI76_RS21395 and BWI76_RS21400 are separated by 35 nucleotides BWI76_RS21385: BWI76_RS21385 - tRNA/rRNA methyltransferase, at 4,476,385 to 4,477,458 _RS21385 BWI76_RS21390: BWI76_RS21390 - thiol disulfide reductase thioredoxin, at 4,477,662 to 4,478,087 _RS21390 BWI76_RS21395: BWI76_RS21395 - DTW domain-containing protein, at 4,478,157 to 4,478,855 _RS21395 BWI76_RS21400: BWI76_RS21400 - protein lysine acetyltransferase, at 4,478,891 to 4,481,569 _RS21400 Position (kb) 4477 4478 4479Strain fitness (log2 ratio) -3 -2 -1 0 1at 4476.862 kb on - strand, within BWI76_RS21385at 4477.005 kb on + strand, within BWI76_RS21385at 4477.019 kb on - strand, within BWI76_RS21385at 4477.205 kb on - strand, within BWI76_RS21385at 4477.231 kb on - strand, within BWI76_RS21385at 4477.368 kb on + strandat 4477.368 kb on + strandat 4477.376 kb on - strandat 4477.415 kb on + strandat 4477.566 kb on - strandat 4477.655 kb on - strandat 4477.689 kb on + strandat 4477.899 kb on + strand, within BWI76_RS21390at 4477.936 kb on - strand, within BWI76_RS21390at 4478.299 kb on - strand, within BWI76_RS21395at 4478.651 kb on + strand, within BWI76_RS21395at 4478.789 kb on + strandat 4478.813 kb on + strandat 4478.874 kb on + strandat 4479.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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4,476,862 - BWI76_RS21385 0.44 +0.5
4,477,005 + BWI76_RS21385 0.58 -1.2
4,477,019 - BWI76_RS21385 0.59 -0.7
4,477,205 - BWI76_RS21385 0.76 -0.3
4,477,231 - BWI76_RS21385 0.79 +0.5
4,477,368 + +1.3
4,477,368 + +0.1
4,477,376 - -0.5
4,477,415 + -0.5
4,477,566 - -0.7
4,477,655 - -0.8
4,477,689 + +0.2
4,477,899 + BWI76_RS21390 0.56 -1.2
4,477,936 - BWI76_RS21390 0.64 -2.8
4,478,299 - BWI76_RS21395 0.20 -0.8
4,478,651 + BWI76_RS21395 0.71 +0.3
4,478,789 + +0.2
4,478,813 + -2.2
4,478,874 + +1.4
4,479,064 + +0.1

Or see this region's nucleotide sequence