Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18875 and BWI76_RS18880 are separated by 23 nucleotides BWI76_RS18880 and BWI76_RS18885 are separated by 321 nucleotides BWI76_RS18885 and BWI76_RS18890 overlap by 4 nucleotides
BWI76_RS18875: BWI76_RS18875 - nitrogen fixation protein NifM, at 3,913,945 to 3,914,745
_RS18875
BWI76_RS18880: BWI76_RS18880 - flavodoxin, at 3,914,769 to 3,915,299
_RS18880
BWI76_RS18885: BWI76_RS18885 - nitrogen fixation regulatory protein, at 3,915,621 to 3,917,108
_RS18885
BWI76_RS18890: BWI76_RS18890 - nif-specific transcriptional activator NifA, at 3,917,105 to 3,918,679
_RS18890
Position (kb)
3915
3916
3917
3918 Strain fitness (log2 ratio)
-2
-1
0
1 at 3914.792 kb on + strand at 3914.813 kb on - strand at 3915.397 kb on - strand at 3915.641 kb on + strand at 3916.112 kb on + strand, within BWI76_RS18885 at 3916.779 kb on - strand, within BWI76_RS18885 at 3916.853 kb on - strand, within BWI76_RS18885 at 3917.080 kb on + strand at 3917.098 kb on - strand at 3917.189 kb on + strand at 3917.189 kb on + strand at 3917.231 kb on + strand at 3917.256 kb on + strand at 3917.486 kb on - strand, within BWI76_RS18890 at 3917.499 kb on - strand, within BWI76_RS18890 at 3917.514 kb on + strand, within BWI76_RS18890 at 3917.688 kb on - strand, within BWI76_RS18890 at 3917.688 kb on - strand, within BWI76_RS18890 at 3917.693 kb on - strand, within BWI76_RS18890 at 3917.797 kb on - strand, within BWI76_RS18890 at 3917.799 kb on + strand, within BWI76_RS18890 at 3917.810 kb on - strand, within BWI76_RS18890 at 3917.874 kb on - strand, within BWI76_RS18890 at 3918.008 kb on - strand, within BWI76_RS18890
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 3,914,792 + +1.4 3,914,813 - -2.1 3,915,397 - -0.0 3,915,641 + +0.0 3,916,112 + BWI76_RS18885 0.33 -1.7 3,916,779 - BWI76_RS18885 0.78 -0.1 3,916,853 - BWI76_RS18885 0.83 -1.0 3,917,080 + -1.3 3,917,098 - +1.5 3,917,189 + -1.5 3,917,189 + -0.5 3,917,231 + -2.6 3,917,256 + -0.5 3,917,486 - BWI76_RS18890 0.24 +0.1 3,917,499 - BWI76_RS18890 0.25 +0.2 3,917,514 + BWI76_RS18890 0.26 +0.1 3,917,688 - BWI76_RS18890 0.37 +0.0 3,917,688 - BWI76_RS18890 0.37 -0.5 3,917,693 - BWI76_RS18890 0.37 +0.6 3,917,797 - BWI76_RS18890 0.44 -0.5 3,917,799 + BWI76_RS18890 0.44 -0.8 3,917,810 - BWI76_RS18890 0.45 -0.2 3,917,874 - BWI76_RS18890 0.49 -1.7 3,918,008 - BWI76_RS18890 0.57 -0.9
Or see this region's nucleotide sequence