Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18810

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18805 and BWI76_RS18810 are separated by 404 nucleotidesBWI76_RS18810 and BWI76_RS18815 are separated by 16 nucleotides BWI76_RS18805: BWI76_RS18805 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,897,471 to 3,900,986 _RS18805 BWI76_RS18810: BWI76_RS18810 - nitrogenase iron protein, at 3,901,391 to 3,902,272 _RS18810 BWI76_RS18815: BWI76_RS18815 - nitrogenase molybdenum-iron protein alpha chain, at 3,902,289 to 3,903,737 _RS18815 Position (kb) 3901 3902 3903Strain fitness (log2 ratio) -3 -2 -1 0 1at 3900.424 kb on + strand, within BWI76_RS18805at 3900.495 kb on - strand, within BWI76_RS18805at 3901.153 kb on + strandat 3901.185 kb on - strandat 3901.401 kb on - strandat 3901.456 kb on - strandat 3901.456 kb on - strandat 3901.791 kb on - strand, within BWI76_RS18810at 3902.172 kb on - strand, within BWI76_RS18810at 3902.334 kb on + strandat 3902.450 kb on - strand, within BWI76_RS18815

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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3,900,424 + BWI76_RS18805 0.84 +1.7
3,900,495 - BWI76_RS18805 0.86 -0.3
3,901,153 + -0.6
3,901,185 - -0.5
3,901,401 - -1.5
3,901,456 - -2.5
3,901,456 - -3.0
3,901,791 - BWI76_RS18810 0.45 -1.1
3,902,172 - BWI76_RS18810 0.89 -1.0
3,902,334 + +0.3
3,902,450 - BWI76_RS18815 0.11 -1.6

Or see this region's nucleotide sequence