Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17990

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17980 and BWI76_RS17985 are separated by 97 nucleotidesBWI76_RS17985 and BWI76_RS17990 are separated by 132 nucleotidesBWI76_RS17990 and BWI76_RS17995 overlap by 32 nucleotides BWI76_RS17980: BWI76_RS17980 - RNA chaperone ProQ, at 3,736,109 to 3,736,792 _RS17980 BWI76_RS17985: BWI76_RS17985 - hypothetical protein, at 3,736,890 to 3,737,387 _RS17985 BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803 _RS17990 BWI76_RS17995: BWI76_RS17995 - hypothetical protein, at 3,738,772 to 3,741,405 _RS17995 Position (kb) 3737 3738 3739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3736.575 kb on - strand, within BWI76_RS17980at 3736.575 kb on - strand, within BWI76_RS17980at 3736.582 kb on + strand, within BWI76_RS17980at 3736.871 kb on + strandat 3736.871 kb on + strandat 3737.128 kb on - strand, within BWI76_RS17985at 3737.202 kb on + strand, within BWI76_RS17985at 3737.251 kb on - strand, within BWI76_RS17985at 3737.363 kb on - strandat 3737.365 kb on + strandat 3737.413 kb on + strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.492 kb on + strandat 3737.539 kb on + strandat 3737.547 kb on - strandat 3737.596 kb on + strandat 3737.834 kb on - strand, within BWI76_RS17990at 3737.858 kb on - strand, within BWI76_RS17990at 3737.986 kb on - strand, within BWI76_RS17990at 3738.077 kb on + strand, within BWI76_RS17990at 3738.167 kb on + strand, within BWI76_RS17990at 3738.563 kb on - strand, within BWI76_RS17990at 3739.085 kb on - strand, within BWI76_RS17995at 3739.193 kb on - strand, within BWI76_RS17995at 3739.349 kb on + strand, within BWI76_RS17995at 3739.357 kb on - strand, within BWI76_RS17995at 3739.482 kb on + strand, within BWI76_RS17995at 3739.666 kb on - strand, within BWI76_RS17995

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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3,736,575 - BWI76_RS17980 0.68 -1.3
3,736,575 - BWI76_RS17980 0.68 -1.2
3,736,582 + BWI76_RS17980 0.69 -2.8
3,736,871 + -1.4
3,736,871 + +0.8
3,737,128 - BWI76_RS17985 0.48 +0.9
3,737,202 + BWI76_RS17985 0.63 -0.6
3,737,251 - BWI76_RS17985 0.72 -0.9
3,737,363 - -0.7
3,737,365 + +0.4
3,737,413 + -3.3
3,737,421 - -0.3
3,737,421 - -0.5
3,737,421 - +2.6
3,737,421 - -0.8
3,737,421 - -0.5
3,737,492 + +0.1
3,737,539 + +0.3
3,737,547 - -1.3
3,737,596 + +1.5
3,737,834 - BWI76_RS17990 0.24 +0.6
3,737,858 - BWI76_RS17990 0.26 +0.1
3,737,986 - BWI76_RS17990 0.36 -1.3
3,738,077 + BWI76_RS17990 0.43 -2.6
3,738,167 + BWI76_RS17990 0.50 -0.6
3,738,563 - BWI76_RS17990 0.81 -1.5
3,739,085 - BWI76_RS17995 0.12 -2.4
3,739,193 - BWI76_RS17995 0.16 +0.9
3,739,349 + BWI76_RS17995 0.22 -2.2
3,739,357 - BWI76_RS17995 0.22 +0.1
3,739,482 + BWI76_RS17995 0.27 +0.2
3,739,666 - BWI76_RS17995 0.34 +0.8

Or see this region's nucleotide sequence