Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10775

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10765 and BWI76_RS10770 overlap by 4 nucleotidesBWI76_RS10770 and BWI76_RS10775 overlap by 8 nucleotidesBWI76_RS10775 and BWI76_RS10780 overlap by 1 nucleotides BWI76_RS10765: BWI76_RS10765 - pyrimidine utilization protein D, at 2,272,943 to 2,273,746 _RS10765 BWI76_RS10770: BWI76_RS10770 - pyrimidine utilization protein C, at 2,273,743 to 2,274,135 _RS10770 BWI76_RS10775: BWI76_RS10775 - pyrimidine utilization protein B, at 2,274,128 to 2,274,838 _RS10775 BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929 _RS10780 Position (kb) 2274 2275Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2273.158 kb on - strand, within BWI76_RS10765at 2273.158 kb on - strand, within BWI76_RS10765at 2273.403 kb on - strand, within BWI76_RS10765at 2273.463 kb on - strand, within BWI76_RS10765at 2273.851 kb on - strand, within BWI76_RS10770at 2273.922 kb on + strand, within BWI76_RS10770at 2274.148 kb on + strandat 2274.172 kb on + strandat 2274.274 kb on - strand, within BWI76_RS10775at 2274.279 kb on + strand, within BWI76_RS10775at 2274.392 kb on + strand, within BWI76_RS10775at 2274.414 kb on + strand, within BWI76_RS10775at 2274.529 kb on + strand, within BWI76_RS10775at 2274.537 kb on - strand, within BWI76_RS10775at 2274.735 kb on - strand, within BWI76_RS10775at 2274.788 kb on + strandat 2274.796 kb on + strandat 2275.360 kb on + strand, within BWI76_RS10780at 2275.368 kb on - strand, within BWI76_RS10780at 2275.654 kb on - strand, within BWI76_RS10780at 2275.784 kb on + strand, within BWI76_RS10780

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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2,273,158 - BWI76_RS10765 0.27 -3.0
2,273,158 - BWI76_RS10765 0.27 -1.9
2,273,403 - BWI76_RS10765 0.57 -3.4
2,273,463 - BWI76_RS10765 0.65 -0.8
2,273,851 - BWI76_RS10770 0.27 -5.8
2,273,922 + BWI76_RS10770 0.46 -2.2
2,274,148 + -2.8
2,274,172 + -2.3
2,274,274 - BWI76_RS10775 0.21 -4.2
2,274,279 + BWI76_RS10775 0.21 -5.2
2,274,392 + BWI76_RS10775 0.37 -3.7
2,274,414 + BWI76_RS10775 0.40 -4.7
2,274,529 + BWI76_RS10775 0.56 -3.0
2,274,537 - BWI76_RS10775 0.58 -4.8
2,274,735 - BWI76_RS10775 0.85 -3.2
2,274,788 + -2.5
2,274,796 + -2.6
2,275,360 + BWI76_RS10780 0.48 -5.1
2,275,368 - BWI76_RS10780 0.49 -2.7
2,275,654 - BWI76_RS10780 0.75 -2.8
2,275,784 + BWI76_RS10780 0.87 -4.8

Or see this region's nucleotide sequence