Experiment: Thymidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10755 and BWI76_RS10760 are separated by 9 nucleotides BWI76_RS10760 and BWI76_RS10765 overlap by 4 nucleotides BWI76_RS10765 and BWI76_RS10770 overlap by 4 nucleotides BWI76_RS10770 and BWI76_RS10775 overlap by 8 nucleotides
BWI76_RS10755: BWI76_RS10755 - pyrimidine utilization flavin reductase protein F, at 2,271,852 to 2,272,346
_RS10755
BWI76_RS10760: BWI76_RS10760 - nitroreductase family protein, at 2,272,356 to 2,272,946
_RS10760
BWI76_RS10765: BWI76_RS10765 - pyrimidine utilization protein D, at 2,272,943 to 2,273,746
_RS10765
BWI76_RS10770: BWI76_RS10770 - pyrimidine utilization protein C, at 2,273,743 to 2,274,135
_RS10770
BWI76_RS10775: BWI76_RS10775 - pyrimidine utilization protein B, at 2,274,128 to 2,274,838
_RS10775
Position (kb)
2272
2273
2274 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2272.362 kb on - strand at 2272.685 kb on - strand, within BWI76_RS10760 at 2272.734 kb on + strand, within BWI76_RS10760 at 2272.741 kb on + strand, within BWI76_RS10760 at 2272.742 kb on - strand at 2273.158 kb on - strand, within BWI76_RS10765 at 2273.158 kb on - strand, within BWI76_RS10765 at 2273.403 kb on - strand, within BWI76_RS10765 at 2273.463 kb on - strand, within BWI76_RS10765 at 2273.851 kb on - strand, within BWI76_RS10770 at 2273.922 kb on + strand, within BWI76_RS10770 at 2274.148 kb on + strand at 2274.172 kb on + strand at 2274.274 kb on - strand, within BWI76_RS10775 at 2274.279 kb on + strand, within BWI76_RS10775 at 2274.392 kb on + strand, within BWI76_RS10775 at 2274.414 kb on + strand, within BWI76_RS10775 at 2274.529 kb on + strand, within BWI76_RS10775 at 2274.537 kb on - strand, within BWI76_RS10775 at 2274.735 kb on - strand, within BWI76_RS10775
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (N) remove 2,272,362 - -5.2 2,272,685 - BWI76_RS10760 0.56 -6.2 2,272,734 + BWI76_RS10760 0.64 -3.6 2,272,741 + BWI76_RS10760 0.65 -3.4 2,272,742 - +0.0 2,273,158 - BWI76_RS10765 0.27 -3.0 2,273,158 - BWI76_RS10765 0.27 -1.9 2,273,403 - BWI76_RS10765 0.57 -3.4 2,273,463 - BWI76_RS10765 0.65 -0.8 2,273,851 - BWI76_RS10770 0.27 -5.8 2,273,922 + BWI76_RS10770 0.46 -2.2 2,274,148 + -2.8 2,274,172 + -2.3 2,274,274 - BWI76_RS10775 0.21 -4.2 2,274,279 + BWI76_RS10775 0.21 -5.2 2,274,392 + BWI76_RS10775 0.37 -3.7 2,274,414 + BWI76_RS10775 0.40 -4.7 2,274,529 + BWI76_RS10775 0.56 -3.0 2,274,537 - BWI76_RS10775 0.58 -4.8 2,274,735 - BWI76_RS10775 0.85 -3.2
Or see this region's nucleotide sequence