Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07550

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07545 and BWI76_RS07550 overlap by 11 nucleotidesBWI76_RS07550 and BWI76_RS07555 are separated by 469 nucleotides BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948 _RS07545 BWI76_RS07550: BWI76_RS07550 - Zn-dependent hydrolase, at 1,597,938 to 1,599,206 _RS07550 BWI76_RS07555: BWI76_RS07555 - EamA family transporter, at 1,599,676 to 1,600,566 _RS07555 Position (kb) 1597 1598 1599 1600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1597.190 kb on + strand, within BWI76_RS07545at 1597.345 kb on - strand, within BWI76_RS07545at 1597.345 kb on - strand, within BWI76_RS07545at 1597.449 kb on + strand, within BWI76_RS07545at 1597.720 kb on - strand, within BWI76_RS07545at 1597.753 kb on + strand, within BWI76_RS07545at 1597.976 kb on - strandat 1598.065 kb on + strand, within BWI76_RS07550at 1598.342 kb on + strand, within BWI76_RS07550at 1598.471 kb on - strand, within BWI76_RS07550at 1598.774 kb on + strand, within BWI76_RS07550at 1598.852 kb on + strand, within BWI76_RS07550at 1599.053 kb on + strand, within BWI76_RS07550at 1599.226 kb on - strandat 1599.428 kb on + strandat 1599.602 kb on - strandat 1599.905 kb on + strand, within BWI76_RS07555at 1599.910 kb on + strand, within BWI76_RS07555at 1599.918 kb on - strand, within BWI76_RS07555at 1600.059 kb on - strandat 1600.094 kb on + strand, within BWI76_RS07555at 1600.130 kb on + strand, within BWI76_RS07555

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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1,597,190 + BWI76_RS07545 0.36 -0.1
1,597,345 - BWI76_RS07545 0.49 +0.2
1,597,345 - BWI76_RS07545 0.49 -2.4
1,597,449 + BWI76_RS07545 0.58 -0.3
1,597,720 - BWI76_RS07545 0.81 +0.1
1,597,753 + BWI76_RS07545 0.83 +2.4
1,597,976 - +0.1
1,598,065 + BWI76_RS07550 0.10 -0.8
1,598,342 + BWI76_RS07550 0.32 +0.9
1,598,471 - BWI76_RS07550 0.42 -0.1
1,598,774 + BWI76_RS07550 0.66 +0.2
1,598,852 + BWI76_RS07550 0.72 +0.5
1,599,053 + BWI76_RS07550 0.88 +0.1
1,599,226 - +0.1
1,599,428 + -3.1
1,599,602 - -0.2
1,599,905 + BWI76_RS07555 0.26 -0.6
1,599,910 + BWI76_RS07555 0.26 +0.4
1,599,918 - BWI76_RS07555 0.27 +0.5
1,600,059 - -0.8
1,600,094 + BWI76_RS07555 0.47 -0.5
1,600,130 + BWI76_RS07555 0.51 -0.2

Or see this region's nucleotide sequence