Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07100

Experiment: Thymidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS07090 and BWI76_RS07095 are separated by 137 nucleotidesBWI76_RS07095 and BWI76_RS07100 overlap by 1 nucleotidesBWI76_RS07100 and BWI76_RS07105 are separated by 340 nucleotidesBWI76_RS07105 and BWI76_RS07110 are separated by 363 nucleotides BWI76_RS07090: BWI76_RS07090 - cysteine--tRNA ligase, at 1,490,052 to 1,491,437 _RS07090 BWI76_RS07095: BWI76_RS07095 - ribosome-associated protein, at 1,491,575 to 1,491,787 _RS07095 BWI76_RS07100: BWI76_RS07100 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 1,491,787 to 1,492,653 _RS07100 BWI76_RS07105: BWI76_RS07105 - tRNA-Arg, at 1,492,994 to 1,493,070 _RS07105 BWI76_RS07110: BWI76_RS07110 - DNA-binding protein, at 1,493,434 to 1,493,891 _RS07110 Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1491.487 kb on + strandat 1491.487 kb on + strandat 1491.586 kb on + strandat 1491.609 kb on - strand, within BWI76_RS07095at 1491.674 kb on - strand, within BWI76_RS07095at 1491.730 kb on - strand, within BWI76_RS07095at 1491.731 kb on - strand, within BWI76_RS07095at 1491.803 kb on - strandat 1491.813 kb on - strandat 1491.822 kb on + strandat 1491.822 kb on + strandat 1492.770 kb on - strandat 1492.905 kb on - strandat 1492.951 kb on + strandat 1493.095 kb on - strandat 1493.099 kb on + strandat 1493.145 kb on - strandat 1493.152 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.157 kb on + strandat 1493.159 kb on - strandat 1493.162 kb on + strandat 1493.165 kb on - strandat 1493.165 kb on - strandat 1493.165 kb on - strandat 1493.165 kb on - strandat 1493.165 kb on - strandat 1493.167 kb on + strandat 1493.167 kb on + strandat 1493.167 kb on + strandat 1493.167 kb on + strandat 1493.172 kb on + strandat 1493.175 kb on - strandat 1493.175 kb on - strandat 1493.175 kb on - strandat 1493.175 kb on - strandat 1493.177 kb on + strandat 1493.177 kb on + strandat 1493.180 kb on + strandat 1493.185 kb on - strandat 1493.185 kb on - strandat 1493.187 kb on - strandat 1493.187 kb on - strandat 1493.187 kb on - strandat 1493.188 kb on - strandat 1493.194 kb on - strandat 1493.194 kb on - strandat 1493.215 kb on + strandat 1493.216 kb on - strandat 1493.223 kb on - strandat 1493.225 kb on + strandat 1493.230 kb on - strandat 1493.231 kb on + strandat 1493.233 kb on - strandat 1493.239 kb on - strandat 1493.240 kb on - strandat 1493.295 kb on - strandat 1493.314 kb on + strandat 1493.319 kb on + strandat 1493.321 kb on + strandat 1493.322 kb on - strandat 1493.322 kb on - strandat 1493.327 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.328 kb on + strandat 1493.329 kb on - strandat 1493.329 kb on - strandat 1493.329 kb on - strandat 1493.329 kb on - strandat 1493.329 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.336 kb on - strandat 1493.338 kb on + strandat 1493.436 kb on + strandat 1493.454 kb on - strandat 1493.516 kb on + strand, within BWI76_RS07110at 1493.576 kb on - strand, within BWI76_RS07110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
remove
1,491,487 + +0.8
1,491,487 + +0.7
1,491,586 + -0.8
1,491,609 - BWI76_RS07095 0.16 -0.3
1,491,674 - BWI76_RS07095 0.46 +0.1
1,491,730 - BWI76_RS07095 0.73 +0.3
1,491,731 - BWI76_RS07095 0.73 -0.6
1,491,803 - -1.2
1,491,813 - -1.2
1,491,822 + -4.3
1,491,822 + -1.4
1,492,770 - +0.9
1,492,905 - +0.5
1,492,951 + +0.4
1,493,095 - +1.2
1,493,099 + -0.4
1,493,145 - +1.9
1,493,152 + -2.9
1,493,157 + +1.9
1,493,157 + +1.2
1,493,157 + -0.3
1,493,157 + +0.3
1,493,157 + -0.4
1,493,157 + +0.2
1,493,157 + -0.1
1,493,159 - +0.2
1,493,162 + -0.8
1,493,165 - -0.4
1,493,165 - +0.2
1,493,165 - -1.5
1,493,165 - +2.2
1,493,165 - +1.6
1,493,167 + +0.4
1,493,167 + +0.4
1,493,167 + -0.1
1,493,167 + -0.4
1,493,172 + -0.4
1,493,175 - -1.8
1,493,175 - +1.2
1,493,175 - -1.9
1,493,175 - +0.6
1,493,177 + -2.2
1,493,177 + +1.1
1,493,180 + -1.6
1,493,185 - +2.2
1,493,185 - +0.9
1,493,187 - -1.7
1,493,187 - +0.2
1,493,187 - -0.6
1,493,188 - +0.9
1,493,194 - +0.1
1,493,194 - +3.5
1,493,215 + -0.4
1,493,216 - -0.4
1,493,223 - -2.2
1,493,225 + -0.8
1,493,230 - -1.7
1,493,231 + +0.4
1,493,233 - -3.3
1,493,239 - +0.3
1,493,240 - -2.8
1,493,295 - -3.6
1,493,314 + -0.4
1,493,319 + -1.3
1,493,321 + +0.0
1,493,322 - -1.3
1,493,322 - +0.4
1,493,327 + -0.2
1,493,328 + -0.4
1,493,328 + -1.5
1,493,328 + -1.3
1,493,328 + -0.4
1,493,328 + -1.7
1,493,328 + -2.2
1,493,328 + +0.2
1,493,329 - +0.6
1,493,329 - -1.0
1,493,329 - +1.9
1,493,329 - -2.4
1,493,329 - -1.9
1,493,336 - -0.3
1,493,336 - +1.9
1,493,336 - -2.0
1,493,336 - +0.4
1,493,336 - -2.0
1,493,336 - -1.3
1,493,336 - -0.1
1,493,338 + +2.5
1,493,436 + -1.2
1,493,454 - +3.4
1,493,516 + BWI76_RS07110 0.18 -1.0
1,493,576 - BWI76_RS07110 0.31 -0.2

Or see this region's nucleotide sequence